Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 5.9e-75 284.6 206 100.0
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.8e-20 103.6 101 64.4
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 6.6e-18 95.1 101 65.3
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 5.6e-17 92.0 129 52.7
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.6e-17 92.0 129 52.7
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 9.5e-17 91.3 106 57.5
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 6.2e-16 88.6 110 51.8
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 1.8e-15 87.0 112 54.5
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.1e-15 86.3 130 49.2
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 4.0e-15 85.9 102 58.8
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 4.0e-15 85.9 124 45.2
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 5.2e-15 85.5 128 48.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 2.0e-14 83.6 91 57.1
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 2.6e-14 83.2 134 40.3
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 5.8e-14 82.0 91 58.2
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 7.5e-14 81.6 91 59.3
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 9.8e-14 81.3 94 57.4
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 9.8e-14 81.3 84 59.5
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.2e-13 80.1 80 58.8
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.7e-13 79.3 99 55.6
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 3.7e-13 79.3 168 42.9
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 6.4e-13 78.6 106 52.8
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 8.3e-13 78.2 99 54.5
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 1.4e-12 77.4 111 49.5
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 1.4e-12 77.4 135 48.9
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 1.9e-12 77.0 105 47.6
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 1.9e-12 77.0 105 47.6
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.9e-12 77.0 171 42.1
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 1.9e-12 77.0 154 49.4
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.2e-12 76.3 139 41.7
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 5.4e-12 75.5 139 41.7
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.4e-12 75.5 96 56.2
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.2e-11 74.3 108 50.0
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 4.6e-11 72.4 97 53.6
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 4.6e-11 72.4 107 50.5
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 6.0e-11 72.0 113 46.9
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 7.8e-11 71.6 171 43.3
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 7.8e-11 71.6 110 36.4
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 7.8e-11 71.6 164 47.0
Prupe.1G524300 Prunus persica HOM05D004728 ORTHO05D002375 1.3e-10 70.9 121 35.5
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.7e-10 70.5 77 57.1
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.7e-10 70.5 162 39.5
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 2.3e-10 70.1 121 47.9
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 3.0e-10 69.7 90 55.6
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 3.0e-10 69.7 75 65.3
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 3.9e-10 69.3 127 45.7
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 5.0e-10 68.9 166 36.7
DCAR_020003 Daucus carota HOM05D004728 ORTHO05D002375 6.6e-10 68.6 108 48.1
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 6.6e-10 68.6 123 46.3
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.1e-09 67.8 108 50.0
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 1.1e-09 67.8 107 43.9
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 1.1e-09 67.8 98 50.0
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.5e-09 67.4 108 29.6
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.5e-09 67.4 108 29.6
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.5e-09 67.4 111 46.8
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.5e-09 66.6 111 45.9
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 3.3e-09 66.2 124 49.2
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 3.3e-09 66.2 95 53.7
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 4.3e-09 65.9 116 46.6
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 5.6e-09 65.5 102 44.1
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 5.6e-09 65.5 94 53.2
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 5.6e-09 65.5 105 49.5
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 5.6e-09 65.5 113 47.8
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 5.6e-09 65.5 81 55.6
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 9.5e-09 64.7 79 57.0
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 9.5e-09 64.7 79 58.2
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.2e-08 64.3 155 39.4
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 1.2e-08 64.3 67 44.8
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.2e-08 64.3 162 29.6
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 1.2e-08 64.3 94 50.0
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 1.6e-08 63.9 120 32.5
PSO700G0018 Papaver somniferum HOM05D015253 ORTHO05D002375 1.6e-08 63.9 70 38.6
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.1e-08 63.5 83 54.2
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 2.1e-08 63.5 102 43.1
MSTRG.25397 Avicennia marina HOM05D004728 ORTHO05D002375 2.1e-08 63.5 131 42.7
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.1e-08 63.5 120 44.2
Lalb_Chr10g0102541 Lupinus albus HOM05D012119 ORTHO05D002375 2.1e-08 63.5 98 46.9
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.8e-08 63.2 104 46.2
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 2.8e-08 63.2 97 35.1
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 2.8e-08 63.2 102 49.0
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 2.8e-08 63.2 128 42.2
QL02p002250 Quercus lobata HOM05D004728 ORTHO05D002375 2.8e-08 63.2 108 50.9
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 3.6e-08 62.8 82 48.8
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 3.6e-08 62.8 111 46.8
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 3.6e-08 62.8 109 43.1
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 4.7e-08 62.4 166 36.1
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 4.7e-08 62.4 100 33.0
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 4.7e-08 62.4 66 36.4
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.2e-08 62.0 93 44.1
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 6.2e-08 62.0 121 33.1
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 8.1e-08 61.6 123 44.7
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 8.1e-08 61.6 118 33.1
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 8.1e-08 61.6 91 46.2
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 8.1e-08 61.6 97 33.0
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.1e-07 61.2 80 56.2
Glyma.14G177800 Glycine max HOM05D012119 ORTHO05D002375 1.4e-07 60.8 71 33.8
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 1.4e-07 60.8 103 45.6
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 1.4e-07 60.8 111 45.0
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 1.4e-07 60.8 110 44.5
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 1.8e-07 60.5 100 47.0
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 1.8e-07 60.5 97 51.5
Glyma.02G210100 Glycine max HOM05D012119 ORTHO05D002375 1.8e-07 60.5 116 31.0
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 1.8e-07 60.5 133 30.1
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.8e-07 60.5 78 34.6
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 2.3e-07 60.1 108 43.5
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.3e-07 60.1 75 38.7
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 3.1e-07 59.7 105 43.8
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 3.1e-07 59.7 153 41.8
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 4.0e-07 59.3 109 27.5
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 4.0e-07 59.3 155 39.4
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 4.0e-07 59.3 156 40.4
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 4.0e-07 59.3 109 44.0
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 5.2e-07 58.9 90 42.2
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.2e-07 58.9 93 45.2
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 6.8e-07 58.5 91 48.4
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 6.8e-07 58.5 90 48.9
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 6.8e-07 58.5 86 34.9
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 6.8e-07 58.5 113 47.8
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 8.9e-07 58.2 92 48.9
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 8.9e-07 58.2 93 35.5
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 8.9e-07 58.2 79 55.7
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.2e-06 57.8 104 46.2
MD15G1317500 Malus domestica HOM05D004728 ORTHO05D002375 1.2e-06 57.8 52 46.2
PGSC0003DMG400030843 Solanum tuberosum HOM05D021150 ORTHO05D002375 1.2e-06 57.8 85 51.8
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.2e-06 57.8 79 54.4
Glyma.02G210000 Glycine max HOM05D012119 ORTHO05D002375 1.5e-06 57.4 69 49.3
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 1.5e-06 57.4 77 51.9
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.5e-06 57.4 105 43.8
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 2.0e-06 57.0 90 48.9
FAN26G2532 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.0e-06 57.0 92 48.9
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 2.0e-06 57.0 75 54.7
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 2.0e-06 57.0 73 47.9
GSVIVG01003435001 Vitis vinifera HOM05D004728 ORTHO05D002375 2.0e-06 57.0 92 31.5
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 3.4e-06 56.2 95 32.6
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 3.4e-06 56.2 115 27.8
Sopen04g029740 Solanum pennellii HOM05D021150 ORTHO05D002375 3.4e-06 56.2 73 56.2
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 4.4e-06 55.8 91 30.8
Solyc04g074780.4 Solanum lycopersicum HOM05D021150 ORTHO05D002375 4.4e-06 55.8 158 35.4
Nitab4.5_0007108g0040 Nicotiana tabacum HOM05D021150 ORTHO05D002375 5.8e-06 55.5 77 57.1
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 5.8e-06 55.5 118 30.5
Aqoxy476s001 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 7.5e-06 55.1 112 43.8
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 7.5e-06 55.1 115 47.0
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 7.5e-06 55.1 113 42.5
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 9.9e-06 54.7 77 37.7
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 9.9e-06 54.7 86 31.4


User provided reference genes

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