Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.6e-46 188.3 95 100.0
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.1e-39 164.5 115 80.0
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.1e-39 164.5 115 80.0
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.7e-38 160.2 116 78.4
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.3e-37 159.5 115 77.4
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 8.5e-37 156.8 115 73.0
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 3.2e-36 154.8 115 72.2
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 3.2e-36 154.8 115 73.0
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 9.4e-36 153.3 115 72.2
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 2.7e-35 151.8 115 71.3
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 4.7e-35 151.0 115 70.4
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 7.9e-35 150.2 115 70.4
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 2.3e-34 148.7 115 72.2
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.0e-34 148.3 115 69.6
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 3.9e-34 147.9 114 69.3
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 5.2e-34 147.5 115 68.7
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 6.7e-34 147.1 115 69.6
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 8.8e-34 146.7 115 67.8
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 8.8e-34 146.7 115 69.6
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 8.8e-34 146.7 115 69.6
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 1.1e-33 146.4 115 69.6
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.5e-33 146.0 115 69.6
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 1.5e-33 146.0 115 67.0
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 2.0e-33 145.6 115 70.4
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 2.0e-33 145.6 114 67.5
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 3.3e-33 144.8 115 69.6
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 5.7e-33 144.1 115 67.8
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 7.4e-33 143.7 115 68.7
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.4e-33 143.7 115 68.7
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.4e-33 143.7 115 68.7
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 7.4e-33 143.7 115 68.7
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 7.4e-33 143.7 115 68.7
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 7.4e-33 143.7 115 66.1
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 9.7e-33 143.3 115 69.6
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 9.7e-33 143.3 115 69.6
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 1.3e-32 142.9 115 67.8
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 1.3e-32 142.9 115 69.6
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 1.7e-32 142.5 115 67.8
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.7e-32 142.5 115 67.0
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 2.2e-32 142.1 115 68.7
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 2.8e-32 141.7 116 69.0
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 3.7e-32 141.4 115 65.2
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 6.3e-32 140.6 115 64.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 6.3e-32 140.6 115 66.1
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 6.3e-32 140.6 115 66.1
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 6.3e-32 140.6 115 65.2
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 6.3e-32 140.6 115 65.2
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 8.2e-32 140.2 115 67.0
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 8.2e-32 140.2 115 66.1
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 8.2e-32 140.2 115 65.2
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 65.2
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 65.2
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 65.2
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 65.2
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.1e-31 139.8 114 69.3
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 67.0
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 67.0
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 1.4e-31 139.4 115 66.1
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.8e-31 139.0 109 69.7
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 1.8e-31 139.0 115 64.3
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 66.1
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 66.1
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 64.3
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 66.1
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 64.3
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 67.0
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 3.1e-31 138.3 115 66.1
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 3.1e-31 138.3 115 64.3
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 3.1e-31 138.3 115 64.3
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 4.1e-31 137.9 115 64.3
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 4.1e-31 137.9 115 62.6
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 4.1e-31 137.9 115 67.0
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 5.3e-31 137.5 115 66.1
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 5.3e-31 137.5 115 63.5
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 5.3e-31 137.5 115 65.2
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 7.0e-31 137.1 115 64.3
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 7.0e-31 137.1 115 65.2
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 7.0e-31 137.1 117 64.1
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 9.1e-31 136.7 115 64.3
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 9.1e-31 136.7 115 63.5
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 9.1e-31 136.7 103 69.9
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 9.1e-31 136.7 119 66.4
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 9.1e-31 136.7 115 67.0
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 9.1e-31 136.7 111 68.5
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 1.2e-30 136.3 115 63.5
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 1.2e-30 136.3 115 66.1
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 2.0e-30 135.6 115 64.3
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 2.6e-30 135.2 115 65.2
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 2.6e-30 135.2 115 62.6
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 3.5e-30 134.8 115 65.2
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 3.5e-30 134.8 115 65.2
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 3.5e-30 134.8 115 64.3
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.5e-30 134.4 97 74.2
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 7.7e-30 133.7 115 62.6
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 7.7e-30 133.7 110 65.5
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 1.0e-29 133.3 115 65.2
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.0e-29 133.3 115 67.8
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 1.0e-29 133.3 115 64.3
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 1.7e-29 132.5 115 62.6
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.7e-29 132.5 115 63.5
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 1.7e-29 132.5 115 64.3
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 2.2e-29 132.1 115 62.6
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 2.2e-29 132.1 115 61.7
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 2.9e-29 131.7 119 63.0
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 2.9e-29 131.7 109 65.1
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 2.9e-29 131.7 116 63.8
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 6.5e-29 130.6 119 63.0
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 8.5e-29 130.2 115 67.0
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 8.5e-29 130.2 115 59.1
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.1e-28 129.8 115 62.6
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 1.1e-28 129.8 111 65.8
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.5e-28 129.4 115 60.9
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 1.9e-28 129.0 115 60.0
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 2.5e-28 128.6 115 61.7
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.2e-28 128.3 115 62.6
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 3.2e-28 128.3 106 66.0
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 5.5e-28 127.5 119 61.3
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 5.5e-28 127.5 113 60.2
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 9.4e-28 126.7 119 60.5
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-27 126.3 119 60.5
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-27 126.3 119 60.5
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-27 126.3 119 59.7
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 4.7e-27 124.4 119 57.1
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 4.7e-27 124.4 115 60.9
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 8.0e-27 123.6 119 56.3
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 8.0e-27 123.6 98 69.4
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 1.0e-26 123.2 119 55.5
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.8e-26 122.5 118 56.8
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.3e-26 122.1 119 55.5
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 4.0e-26 121.3 119 55.5
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 5.2e-26 120.9 119 56.3
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 2.0e-25 119.0 119 57.1
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.0e-25 119.0 115 62.6
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 3.3e-25 118.2 119 55.5
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 1.7e-24 115.9 120 58.3
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 3.7e-24 114.8 119 56.3
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 6.3e-24 114.0 119 52.9
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 3.1e-23 111.7 118 55.9
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 5.3e-23 110.9 115 53.9
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.0e-22 109.0 92 67.4
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.0e-22 109.0 99 61.6
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.0e-22 109.0 112 53.6
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 4.5e-22 107.8 96 62.5
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 4.5e-22 107.8 93 68.8
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 1.0e-21 106.7 96 59.4
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 1.7e-21 105.9 66 86.4
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 2.2e-21 105.5 66 86.4
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.9e-21 105.1 66 84.8
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 1.1e-20 103.2 91 62.6
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 3.2e-20 101.7 95 61.1
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 2.1e-19 99.0 93 60.2
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 3.6e-19 98.2 87 63.2
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-18 95.9 63 74.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-18 95.9 63 74.6
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.3e-18 95.5 61 82.0
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 3.0e-18 95.1 59 88.1
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 8.8e-18 93.6 63 74.6
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 8.8e-18 93.6 63 74.6
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 8.8e-18 93.6 105 50.5
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 2.6e-17 92.0 70 74.3
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 3.4e-17 91.7 97 54.6
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 2.2e-16 89.0 93 53.8
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 2.8e-16 88.6 69 71.0
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 1.1e-15 86.7 97 54.6
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 7.0e-15 84.0 105 42.9
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 5.9e-14 80.9 54 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 1.3e-13 79.7 110 43.6
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 2.9e-13 78.6 50 80.0
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.5e-12 73.6 51 76.5
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 6.3e-08 60.8 66 48.5


User provided reference genes

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