Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 6.9e-212 740.3 367 100.0
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 3.7e-157 558.5 360 74.2
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.0e-155 551.2 361 74.0
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 3.3e-153 545.4 360 72.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.2e-151 538.1 356 71.1
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 4.4e-150 535.0 359 70.2
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.7e-149 533.1 359 70.5
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 3.2e-148 528.9 359 70.2
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.1e-148 528.5 361 71.2
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.6e-147 526.6 361 70.9
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.0e-147 524.6 355 70.7
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 7.8e-147 524.2 359 69.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.5e-145 519.2 367 67.8
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 4.3e-145 518.5 355 70.7
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 4.3e-145 518.5 360 69.4
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 9.6e-145 517.3 359 70.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.2e-144 516.9 371 68.5
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 6.2e-144 514.6 354 70.1
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 6.2e-144 514.6 359 67.7
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-143 513.8 366 66.7
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.1e-143 513.8 410 63.4
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-143 513.5 356 68.0
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-143 513.5 356 68.0
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.8e-143 513.1 354 68.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 6.9e-143 511.1 366 67.2
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 8.9e-143 510.8 360 68.6
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 8.9e-143 510.8 355 70.1
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.4e-142 508.8 362 67.7
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 3.4e-142 508.8 362 67.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.4e-142 508.8 355 68.7
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.4e-142 508.4 361 66.8
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.6e-142 507.7 356 66.9
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 9.9e-142 507.3 354 67.2
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 9.9e-142 507.3 361 67.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 9.9e-142 507.3 362 67.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.7e-141 506.5 367 66.2
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.2e-141 506.1 356 68.0
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 2.2e-141 506.1 364 69.0
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.9e-141 505.8 367 66.8
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.8e-141 505.4 354 68.1
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 4.9e-141 505.0 356 68.0
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 4.2e-140 501.9 357 67.2
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.4e-140 501.5 360 67.5
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 7.1e-140 501.1 360 66.7
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.7e-139 499.2 360 67.2
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.0e-138 497.3 359 66.0
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.3e-138 496.9 391 62.9
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.3e-138 496.9 359 66.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.7e-138 496.5 359 66.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.7e-138 496.5 365 66.0
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.3e-138 496.1 361 65.9
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.1e-137 493.8 359 65.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 3.3e-137 492.3 357 66.1
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 7.3e-137 491.1 366 64.2
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 8.1e-136 487.6 361 65.1
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.4e-135 486.9 362 64.4
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 5.3e-135 485.0 361 64.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.2e-134 483.8 358 65.6
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.0e-134 483.0 361 64.3
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.0e-134 483.0 360 65.3
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.6e-134 482.6 361 63.4
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.6e-134 482.6 362 63.8
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.6e-134 481.1 393 61.1
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 9.9e-134 480.7 361 64.8
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 9.9e-134 480.7 355 66.2
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.7e-133 479.9 351 66.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.7e-133 479.9 355 65.1
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.9e-133 479.2 362 63.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.8e-133 478.8 355 64.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 3.8e-133 478.8 375 64.5
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.8e-133 478.8 380 61.8
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 8.4e-133 477.6 351 66.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.4e-132 476.9 354 65.8
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.4e-132 476.9 354 65.8
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-132 476.9 374 63.4
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-132 476.9 380 62.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 7.1e-132 474.6 362 63.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.1e-132 474.6 380 61.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-131 473.4 356 64.3
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.0e-130 470.7 320 69.7
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.0e-130 470.7 351 65.2
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.3e-130 469.5 394 60.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.3e-130 469.5 356 65.2
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 6.7e-130 468.0 361 62.6
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.5e-129 466.1 362 62.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.3e-129 465.7 360 63.3
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 2.1e-128 463.0 354 62.7
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 3.7e-128 462.2 353 62.6
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.8e-127 459.9 356 62.4
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.7e-125 453.4 298 73.2
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.2e-124 448.7 364 62.4
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.2e-124 448.7 364 62.4
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 7.1e-124 448.0 316 68.4
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 7.1e-124 448.0 369 58.3
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.6e-123 446.8 359 61.0
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.7e-123 446.0 326 65.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.8e-122 443.4 353 61.8
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.1e-120 436.4 360 59.4
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 8.2e-120 434.5 296 70.9
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.1e-119 432.6 355 60.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 3.4e-118 429.1 356 61.0
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.1e-116 424.1 293 69.3
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.2e-116 422.2 355 60.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-115 420.2 354 58.5
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 2.1e-115 419.9 294 70.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.1e-111 407.5 291 64.9
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 4.5e-110 402.1 296 64.9
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.0e-109 398.7 290 65.2
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.2e-108 395.6 380 55.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.5e-102 377.1 346 52.3
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-102 376.7 280 65.7
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 3.4e-102 375.9 360 53.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 9.4e-100 367.9 286 60.8
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.1e-99 366.7 355 53.0
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.2e-96 356.7 342 51.2
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 4.8e-96 355.5 355 51.5
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 5.3e-95 352.1 314 53.5
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.1e-92 344.4 332 49.7
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.1e-91 338.6 360 49.2
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 5.7e-89 332.0 358 50.0
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 9.7e-89 331.3 359 51.0
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.5e-86 322.8 270 60.0
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 4.5e-86 322.4 355 51.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.4e-58 231.1 334 38.9
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.8e-58 228.8 154 69.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 3.2e-47 193.4 137 67.2
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.0e-46 190.7 362 34.0
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 7.8e-38 162.2 126 65.1
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-35 154.5 140 55.0
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.1e-34 151.8 339 32.4
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.2e-32 144.1 199 39.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.9e-29 133.3 135 51.9
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.2e-27 125.9 104 61.5
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.4e-25 119.8 343 26.2
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 9.9e-25 118.6 109 56.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.9e-24 117.1 87 63.2
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.4e-23 114.0 86 62.8
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.4e-23 114.0 87 60.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-21 107.5 82 63.4
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.1e-21 106.3 80 63.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 6.2e-19 99.4 110 46.4
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.1e-18 98.6 110 45.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.1e-18 97.1 78 61.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 5.8e-17 92.8 104 53.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.9e-17 92.0 72 62.5
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.7e-16 91.3 79 62.0
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.9e-16 89.7 71 62.0
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.9e-16 89.7 71 62.0
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.4e-16 89.0 71 62.0
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.4e-16 89.0 72 61.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-15 88.2 71 60.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.2e-15 86.7 75 58.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.4e-15 86.3 70 58.6
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.1e-15 85.9 72 58.3
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.3e-15 85.5 94 50.0
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-13 81.3 72 55.6
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 2.3e-13 80.9 45 82.2
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 2.8e-11 73.9 65 63.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.7e-11 73.6 89 46.1
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.8e-10 71.2 53 66.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-10 70.9 49 71.4
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-06 58.5 36 80.6
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 7.9e-06 55.8 45 60.0


User provided reference genes

Program Settings