Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.2e-129 464.2 236 100.0
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 3.1e-80 302.4 217 72.4
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.7e-78 296.6 226 69.5
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.8e-78 295.4 226 69.5
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.7e-76 289.3 231 66.2
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.4e-75 287.0 241 63.5
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.0e-75 285.8 242 63.6
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 4.3e-74 282.0 231 64.5
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 9.7e-74 280.8 223 66.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.1e-72 277.3 233 63.1
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.8e-72 276.6 222 65.8
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.8e-72 276.6 232 62.5
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.8e-72 276.6 232 62.5
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 6.9e-72 274.6 239 62.8
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 9.1e-72 274.2 228 62.3
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.5e-71 273.5 228 64.5
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.5e-71 273.5 233 62.2
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.6e-71 272.7 232 62.1
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 5.9e-71 271.6 240 60.0
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 5.9e-71 271.6 222 64.9
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 5.9e-71 271.6 239 60.3
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.0e-70 270.8 233 61.4
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 2.2e-70 269.6 236 61.0
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 2.2e-70 269.6 237 61.2
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.2e-70 269.6 208 66.3
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 3.8e-70 268.9 238 58.8
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.9e-69 266.5 231 64.1
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.9e-69 266.5 237 60.8
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 4.2e-69 265.4 208 66.3
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.6e-68 263.5 231 62.3
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 2.7e-68 262.7 236 61.0
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 6.1e-68 261.5 234 61.5
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.0e-67 260.8 240 61.2
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.8e-67 260.0 212 63.7
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.1e-67 258.5 237 60.3
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 5.1e-67 258.5 237 59.9
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 5.1e-67 258.5 216 63.0
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 8.8e-67 257.7 238 59.2
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 8.8e-67 257.7 221 61.5
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.1e-66 257.3 235 58.3
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.1e-66 257.3 209 64.1
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.5e-66 256.9 224 60.3
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.5e-66 256.9 203 66.0
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.6e-66 256.1 220 60.9
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 7.4e-66 254.6 215 63.7
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 7.4e-66 254.6 216 61.1
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.7e-65 253.4 239 58.2
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 2.2e-65 253.1 240 57.1
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.8e-65 252.7 229 59.0
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 3.7e-65 252.3 235 57.9
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 3.7e-65 252.3 232 57.8
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 6.3e-65 251.5 236 58.9
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 6.3e-65 251.5 243 57.2
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 8.2e-65 251.1 215 62.8
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 8.2e-65 251.1 235 57.9
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 1.1e-64 250.8 222 59.5
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.4e-64 250.4 230 60.4
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.4e-64 249.6 233 59.2
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 3.1e-64 249.2 233 57.5
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 4.1e-64 248.8 228 57.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 5.3e-64 248.4 217 59.9
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 1.2e-63 247.3 232 57.3
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.5e-63 246.9 238 57.1
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.5e-63 246.9 238 55.9
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 3.5e-63 245.7 226 56.2
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 3.5e-63 245.7 226 56.2
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 4.5e-63 245.4 233 56.7
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 5.9e-63 245.0 228 57.5
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 5.9e-63 245.0 231 60.6
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.0e-62 244.2 233 57.9
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.3e-62 243.8 234 58.5
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.7e-62 243.4 212 59.4
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 3.8e-62 242.3 250 54.4
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 5.5e-61 238.4 224 57.1
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 5.5e-61 238.4 238 56.7
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 7.2e-61 238.0 233 54.5
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 9.4e-61 237.7 239 54.8
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.2e-60 237.3 236 55.1
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.2e-60 237.3 206 61.2
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.6e-60 236.9 232 57.3
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 6.1e-60 235.0 232 54.7
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 8.0e-60 234.6 211 60.2
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-59 234.2 201 61.2
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.4e-59 233.8 209 57.9
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 4.0e-59 232.3 209 59.3
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 5.2e-59 231.9 247 54.3
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 5.2e-59 231.9 224 57.6
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.2e-59 231.9 212 57.1
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.1e-58 230.7 238 55.5
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.0e-58 229.9 202 60.4
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 5.7e-58 228.4 210 59.0
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 9.7e-58 227.6 221 58.4
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.3e-57 227.3 212 56.1
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 3.7e-57 225.7 211 55.9
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.3e-57 224.9 214 55.6
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.3e-57 224.9 214 55.6
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.8e-56 223.4 229 53.3
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 3.1e-56 222.6 341 43.1
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 5.3e-56 221.9 220 52.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.2e-55 220.7 194 60.3
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.6e-55 219.5 214 54.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 4.5e-55 218.8 213 57.3
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.3e-54 217.2 215 53.5
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.7e-54 216.9 227 54.2
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.9e-54 216.1 209 53.1
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 3.2e-53 212.6 219 52.5
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.2e-53 212.6 227 53.3
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 3.2e-53 212.6 164 66.5
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 5.5e-53 211.8 297 45.8
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.6e-52 210.3 237 51.5
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.8e-51 206.8 176 61.4
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 5.2e-51 205.3 175 60.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 4.4e-50 202.2 165 65.5
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 4.4e-50 202.2 236 51.7
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 5.7e-50 201.8 222 50.5
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 5.7e-50 201.8 181 57.5
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 7.5e-50 201.4 240 50.8
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 3.7e-49 199.1 149 67.8
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.8e-48 196.8 228 49.1
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 9.1e-48 194.5 236 47.9
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.8e-46 189.1 172 61.0
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.5e-45 187.2 183 56.3
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 3.6e-44 182.6 129 67.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 4.7e-44 182.2 132 69.7
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 3.0e-43 179.5 160 57.5
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 9.8e-42 174.5 211 45.0
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 4.1e-40 169.1 225 46.7
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.2e-39 167.5 180 50.6
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.7e-39 166.4 364 33.8
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 4.5e-39 165.6 180 50.0
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 4.5e-39 165.6 180 50.0
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.3e-38 164.1 175 54.3
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 2.9e-33 146.4 159 52.8
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.2e-32 142.9 189 46.0
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 5.2e-27 125.6 201 43.3
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.7e-25 119.4 182 43.4
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.4e-24 116.7 189 42.3
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 8.6e-22 108.2 109 56.0
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.2e-18 97.8 212 35.8
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.6e-18 96.7 81 56.8
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 3.2e-16 89.7 191 34.0
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.7e-14 84.0 219 35.2
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 5.1e-14 82.4 91 50.5
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.5e-13 80.9 56 73.2
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.9e-13 80.5 61 63.9
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.9e-13 80.5 51 74.5
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.3e-13 79.7 145 37.9
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.6e-12 76.3 45 82.2
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.2e-11 72.4 89 48.3
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.5e-10 70.9 164 35.4
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.9e-09 66.6 45 73.3
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 8.4e-09 65.1 100 43.0
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 5.1e-06 55.8 89 42.7
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 5.1e-06 55.8 65 44.6
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 5.1e-06 55.8 96 36.5
Medtr2g014470 Medicago truncatula HOM05D000175 ORTHO05D000481 6.6e-06 55.5 66 42.4


User provided reference genes

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