Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.0e-268 929.5 455 100.0
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 4.2e-166 588.6 456 64.0
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.5e-163 580.1 454 63.2
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 1.4e-161 573.5 446 64.1
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 4.1e-161 572.0 454 63.0
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 3.4e-160 568.9 456 63.6
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 2.2e-159 566.2 470 60.6
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 2.2e-159 566.2 453 62.7
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 3.8e-159 565.5 465 59.8
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.4e-158 563.5 463 59.4
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 3.2e-158 562.4 450 62.2
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.2e-157 560.5 455 60.9
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.1e-157 559.7 455 60.7
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.9e-156 555.4 454 60.4
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.9e-155 553.1 463 58.5
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.5e-155 552.7 454 60.1
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 2.2e-154 549.7 461 59.4
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 6.3e-154 548.1 466 59.2
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.4e-150 537.0 459 59.5
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 6.7e-148 528.1 457 58.9
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 2.2e-146 523.1 474 57.8
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 2.8e-146 522.7 460 57.0
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 6.9e-145 518.1 451 57.4
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 5.9e-144 515.0 458 58.5
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 3.8e-143 512.3 452 56.6
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 8.5e-143 511.1 449 57.2
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 1.1e-142 510.8 461 56.0
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 1.9e-142 510.0 460 57.4
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 3.2e-142 509.2 461 56.2
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 4.2e-142 508.8 449 57.2
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 7.2e-142 508.1 448 57.4
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 1.6e-141 506.9 450 56.0
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 2.1e-141 506.5 451 56.3
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 2.1e-141 506.5 462 55.2
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 4.7e-141 505.4 455 56.0
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.0e-140 504.2 460 55.0
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 6.7e-140 501.5 456 56.4
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.5e-139 500.4 452 56.2
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 3.3e-139 499.2 448 56.5
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 4.4e-139 498.8 457 56.5
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 5.7e-139 498.4 468 56.4
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 7.4e-139 498.0 459 55.8
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 9.7e-139 497.7 464 55.4
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 9.7e-139 497.7 478 54.2
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 1.3e-138 497.3 447 55.5
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 1.3e-138 497.3 452 56.2
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 2.2e-138 496.5 452 56.2
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 2.2e-138 496.5 465 55.9
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 4.8e-138 495.4 452 56.2
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.1e-137 494.2 459 55.6
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 7.0e-137 491.5 448 56.2
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.2e-136 490.7 459 54.9
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.0e-136 490.0 459 54.9
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 2.0e-136 490.0 454 54.8
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 3.5e-136 489.2 453 57.2
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 1.0e-135 487.6 467 56.3
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 1.0e-135 487.6 467 55.5
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 5.0e-135 485.3 456 52.9
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 6.5e-135 485.0 456 56.1
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 6.5e-135 485.0 448 56.0
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.9e-134 483.4 449 55.9
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 3.2e-134 482.6 469 54.8
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 2.7e-133 479.6 466 52.8
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 1.5e-131 473.8 456 52.6
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 1.7e-130 470.3 459 54.2
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 2.4e-129 466.5 461 52.3
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 1.6e-128 463.8 453 54.1
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 1.9e-126 456.8 463 51.2
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 4.7e-125 452.2 454 52.9
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.5e-123 447.2 429 54.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 1.3e-122 444.1 446 51.6
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 4.1e-121 439.1 457 50.5
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 7.7e-120 434.9 466 51.1
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 4.4e-115 419.1 460 48.7
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 1.3e-114 417.5 448 48.7
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 1.7e-114 417.2 458 47.2
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 1.2e-112 411.0 490 46.9
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 7.8e-112 408.3 447 48.8
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.5e-110 403.3 445 46.7
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 3.6e-109 399.4 443 47.6
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 1.0e-108 397.9 443 47.6
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.0e-108 397.9 443 48.1
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 5.2e-108 395.6 445 48.3
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 7.5e-107 391.7 449 48.1
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 4.6e-104 382.5 441 45.8
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 4.6e-104 382.5 441 45.8
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 6.0e-104 382.1 437 47.8
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 6.0e-104 382.1 304 63.5
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.7e-103 380.6 441 46.7
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 1.7e-103 380.6 410 48.8
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 7.3e-102 375.2 436 46.1
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 6.2e-101 372.1 441 45.6
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 4.0e-100 369.4 441 45.1
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 2.0e-99 367.1 441 44.4
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 8.3e-98 361.7 315 57.5
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 3.9e-95 352.8 441 44.4
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 5.0e-95 352.4 445 44.3
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 2.5e-94 350.1 445 44.0
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 4.3e-86 322.8 363 46.0
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.0e-79 301.6 151 92.7
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 1.5e-75 287.7 269 56.1
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 4.4e-75 286.2 311 51.4
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 6.2e-69 265.8 250 54.0
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.9e-68 262.3 286 48.3
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 2.2e-66 257.3 490 34.1
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 7.4e-62 242.3 327 42.2
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 2.9e-58 230.3 384 37.2
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 9.3e-57 225.3 513 30.8
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 9.0e-52 208.8 237 49.4
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 8.2e-45 185.7 92 93.5
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 2.2e-42 177.6 365 31.8
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 4.2e-33 146.7 195 41.5
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 2.0e-30 137.9 94 63.8
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 2.6e-30 137.5 561 24.1
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-26 125.2 86 65.1
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.1e-25 122.1 129 44.2
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 9.7e-22 109.0 118 50.8
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 2.8e-21 107.5 89 61.8
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 8.2e-21 105.9 77 64.9
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 9.1e-20 102.4 309 31.1
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.7e-18 98.2 161 36.6
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.8e-18 97.1 65 66.2
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 5.5e-17 93.2 102 46.1
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 5.2e-15 86.7 92 45.7
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 3.6e-08 63.9 129 36.4


User provided reference genes

Program Settings