Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.7e-70 269.2 140 100.0
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 8.9e-67 256.9 140 96.4
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 7.1e-32 141.0 132 54.5
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 5.1e-30 134.8 122 58.2
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 3.3e-29 132.1 124 55.6
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 2.1e-28 129.4 123 57.7
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 2.1e-28 129.4 133 54.1
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 2.8e-28 129.0 133 53.4
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 6.2e-28 127.9 128 52.3
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 6.2e-28 127.9 128 53.1
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 1.8e-27 126.3 138 48.6
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 2.4e-27 125.9 135 51.9
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.0e-27 125.2 120 53.3
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 5.3e-27 124.8 120 53.3
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.5e-26 123.2 113 57.5
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.5e-26 123.2 120 52.5
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 2.0e-26 122.9 118 57.6
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 3.4e-26 122.1 107 57.9
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 5.8e-26 121.3 116 52.6
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 3.8e-25 118.6 133 48.1
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.9e-25 118.2 119 52.9
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 6.4e-25 117.9 135 49.6
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 6.4e-25 117.9 136 48.5
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.4e-24 116.7 123 50.4
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 1.9e-24 116.3 124 53.2
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 3.2e-24 115.5 94 63.8
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 4.2e-24 115.2 134 47.0
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 5.5e-24 114.8 138 44.9
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.6e-23 113.2 135 44.4
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.1e-23 112.8 121 52.1
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 3.5e-23 112.1 119 48.7
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 3.5e-23 112.1 129 45.0
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 4.6e-23 111.7 128 46.1
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 4.6e-23 111.7 138 46.4
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.0e-22 110.5 123 47.2
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 1.8e-22 109.8 138 45.7
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 5.1e-22 108.2 125 47.2
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 1.5e-21 106.7 138 44.9
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.5e-21 105.9 104 54.8
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 3.3e-21 105.5 123 49.6
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 3.3e-21 105.5 112 52.7
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 5.6e-21 104.8 138 44.9
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 5.6e-21 104.8 135 43.7
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 7.4e-21 104.4 136 47.1
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 9.6e-21 104.0 130 47.7
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 1.3e-20 103.6 108 56.5
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 1.3e-20 103.6 123 46.3
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 1.6e-20 103.2 127 47.2
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 1.6e-20 103.2 139 43.9
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 4.8e-20 101.7 133 46.6
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 6.2e-20 101.3 87 62.1
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 6.2e-20 101.3 135 42.2
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 6.2e-20 101.3 150 41.3
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 6.2e-20 101.3 126 44.4
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.4e-19 100.1 120 45.8
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.8e-19 99.8 133 45.9
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 3.1e-19 99.0 109 46.8
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 4.0e-19 98.6 129 46.5
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 5.3e-19 98.2 79 65.8
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 5.3e-19 98.2 104 51.0
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 1.2e-18 97.1 93 54.8
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.5e-18 96.7 110 47.3
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.5e-18 96.7 93 53.8
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 5.8e-18 94.7 113 44.2
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 7.6e-18 94.4 104 46.2
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.0e-17 94.0 136 39.7
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.0e-17 94.0 137 40.1
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.0e-17 94.0 129 41.1
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.0e-17 94.0 91 53.8
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 2.2e-17 92.8 111 47.7
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 3.8e-17 92.0 124 44.4
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 8.4e-17 90.9 117 43.6
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.4e-16 90.1 105 46.7
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 1.4e-16 90.1 111 45.9
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 2.5e-16 89.4 105 44.8
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 3.2e-16 89.0 109 44.0
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 3.2e-16 89.0 128 42.2
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 4.2e-16 88.6 110 43.6
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 4.2e-16 88.6 109 44.0
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 4.2e-16 88.6 133 42.1
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 5.5e-16 88.2 106 44.3
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 7.1e-16 87.8 109 44.0
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 7.1e-16 87.8 101 46.5
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 1.2e-15 87.0 99 49.5
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 1.2e-15 87.0 111 46.8
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.6e-15 86.7 131 43.5
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.1e-15 86.3 109 43.1
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 2.7e-15 85.9 105 47.6
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.3e-14 83.6 106 40.6
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 3.3e-13 79.0 93 48.4
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 4.3e-13 78.6 113 40.7
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 3.7e-12 75.5 53 69.8
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.1e-11 72.4 80 50.0
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 6.9e-11 71.2 94 42.6
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 6.9e-11 71.2 94 42.6
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.2e-10 70.5 139 33.8
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 4.5e-10 68.6 127 37.0
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 4.5e-10 68.6 133 33.1
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 1.7e-09 66.6 112 39.3
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 8.5e-09 64.3 81 45.7
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.4e-08 63.5 78 43.6
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.2e-08 62.4 112 38.4
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 4.2e-08 62.0 78 43.6
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 5.5e-08 61.6 63 46.0
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 5.5e-08 61.6 63 46.0
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 7.2e-08 61.2 51 58.8
FAN25G0807 Fragaria x ananassa HOM05D000251 ORTHO05D000414 2.1e-07 59.7 105 38.1
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 3.6e-07 58.9 82 40.2
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 3.6e-07 58.9 72 45.8


User provided reference genes

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