Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 8.4e-42 173.3 91 100.0
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 8.1e-37 156.8 91 86.8
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 1.8e-36 155.6 91 84.6
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 1.8e-36 155.6 91 84.6
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 1.8e-36 155.6 91 86.8
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 2.4e-36 155.2 91 86.8
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 3.1e-36 154.8 90 86.7
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 3.1e-36 154.8 90 86.7
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 6.9e-36 153.7 91 84.6
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 6.9e-36 153.7 89 86.5
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 9.0e-36 153.3 91 84.6
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 9.0e-36 153.3 91 84.6
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.2e-35 152.9 89 86.5
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 1.2e-35 152.9 91 85.7
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.2e-35 152.9 91 84.6
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 2.0e-35 152.1 91 85.7
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 2.0e-35 152.1 91 84.6
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.0e-35 152.1 91 83.5
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.0e-35 152.1 91 85.7
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 2.6e-35 151.8 91 85.7
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 3.4e-35 151.4 91 81.3
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.4e-35 151.4 91 83.5
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 4.5e-35 151.0 91 84.6
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 4.5e-35 151.0 91 85.7
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 4.5e-35 151.0 90 84.4
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 4.5e-35 151.0 90 84.4
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 5.8e-35 150.6 91 84.6
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.3e-34 149.4 90 82.2
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 1.3e-34 149.4 89 83.1
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 2.9e-34 148.3 91 81.3
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.8e-34 147.9 91 82.4
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 6.4e-34 147.1 91 80.2
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 6.4e-34 147.1 91 82.4
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 6.4e-34 147.1 91 81.3
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 6.4e-34 147.1 91 81.3
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 6.4e-34 147.1 91 82.4
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 8.4e-34 146.7 85 85.9
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 8.4e-34 146.7 92 82.6
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 1.1e-33 146.4 88 80.7
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 1.4e-33 146.0 85 84.7
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.9e-33 145.6 91 78.0
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 3.2e-33 144.8 91 80.2
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 3.2e-33 144.8 91 80.2
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 3.2e-33 144.8 91 80.2
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 4.2e-33 144.4 89 80.9
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 5.5e-33 144.1 88 80.7
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 7.1e-33 143.7 91 79.1
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 9.3e-33 143.3 91 81.3
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 9.3e-33 143.3 91 81.3
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.6e-32 142.5 89 80.9
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 2.7e-32 141.7 91 79.1
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 2.7e-32 141.7 91 80.2
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 3.5e-32 141.4 90 78.9
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 6.0e-32 140.6 86 81.4
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.0e-31 139.8 86 81.4
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 5.1e-31 137.5 89 77.5
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 5.1e-31 137.5 82 85.4
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 2.5e-30 135.2 86 74.4
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.3e-30 134.8 89 76.4
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 3.3e-30 134.8 86 76.7
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 5.6e-30 134.0 86 76.7
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 5.6e-30 134.0 86 76.7
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.3e-29 132.9 90 74.4
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.3e-29 132.9 90 74.4
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 3.7e-29 131.3 86 77.9
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.8e-29 131.0 89 71.9
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 8.2e-29 130.2 86 73.3
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 1.4e-28 129.4 86 74.4
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 2.4e-28 128.6 82 79.3
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 4.0e-28 127.9 86 70.9
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 5.3e-28 127.5 87 72.4
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 9.0e-28 126.7 90 71.1
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 2.0e-27 125.6 90 68.9
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 2.0e-27 125.6 85 74.1
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 3.4e-27 124.8 89 71.9
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 3.4e-27 124.8 82 76.8
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 5.8e-27 124.0 83 75.9
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 5.8e-27 124.0 74 83.8
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 7.6e-27 123.6 88 69.3
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.0e-26 123.2 88 70.5
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 2.2e-26 122.1 83 73.5
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 4.9e-26 120.9 83 71.1
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 6.5e-26 120.6 83 74.7
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 8.4e-26 120.2 81 70.4
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 1.1e-25 119.8 83 72.3
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 1.1e-25 119.8 73 82.2
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 1.4e-25 119.4 89 69.7
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 2.1e-24 115.5 83 68.7
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 2.1e-24 115.5 85 68.2
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 2.7e-24 115.2 88 69.3
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 1.3e-23 112.8 89 67.4
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 3.0e-23 111.7 83 66.3
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 7.4e-22 107.1 84 61.9
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 7.4e-22 107.1 84 60.7
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 1.3e-21 106.3 82 62.2
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.6e-21 105.9 91 62.6
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.6e-21 105.9 82 62.2
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 2.2e-21 105.5 82 61.0
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 3.7e-21 104.8 82 61.0
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 3.7e-21 104.8 82 61.0
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 3.7e-21 104.8 82 61.0
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 3.7e-21 104.8 82 61.0
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 4.8e-21 104.4 84 59.5
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 4.8e-21 104.4 86 61.6
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 1.4e-20 102.8 82 59.8
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 2.4e-20 102.1 82 59.8
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 2.4e-20 102.1 82 59.8
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 4.1e-20 101.3 60 86.7
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 1.2e-19 99.8 65 73.8
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.5e-19 99.4 79 64.6
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 4.5e-19 97.8 87 56.3
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 3.6e-16 88.2 51 86.3
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 6.7e-15 84.0 82 53.7
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.1e-14 83.2 68 60.3
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.3e-13 79.7 60 70.0
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 2.8e-13 78.6 70 62.9
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 4.8e-13 77.8 60 65.0
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 6.3e-13 77.4 50 76.0
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 8.2e-13 77.0 60 65.0
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 8.2e-13 77.0 60 68.3
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 1.1e-12 76.6 82 50.0
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 6.9e-12 73.9 49 69.4
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 2.5e-09 65.5 48 68.8
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 2.5e-09 65.5 48 68.8


User provided reference genes

Program Settings