Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.6e-52 209.1 105 100.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.2e-18 96.7 107 50.5
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 4.4e-18 94.7 116 49.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 9.8e-18 93.6 113 49.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.8e-17 91.3 113 46.9
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 6.3e-17 90.9 118 44.9
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 8.3e-17 90.5 114 47.4
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.4e-16 87.8 113 45.1
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 5.4e-16 87.8 113 45.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.0e-16 87.4 113 46.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 9.1e-16 87.0 114 42.1
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 9.1e-16 87.0 114 46.5
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.2e-15 86.7 108 45.4
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.0e-15 85.9 109 49.5
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.0e-15 85.9 109 49.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 2.7e-15 85.5 114 43.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.5e-15 85.1 113 42.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 4.5e-15 84.7 109 43.1
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.5e-15 84.7 113 42.5
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.7e-15 84.0 107 44.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 7.7e-15 84.0 109 43.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 7.7e-15 84.0 115 43.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.0e-14 83.6 115 43.5
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.2e-14 82.4 113 46.0
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.5e-14 80.9 112 42.9
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 8.5e-14 80.5 115 42.6
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.1e-13 80.1 116 40.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-13 79.7 110 41.8
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.9e-13 79.3 112 43.8
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.9e-13 79.3 113 41.6
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.9e-13 79.3 113 41.6
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.2e-13 78.2 113 40.7
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 4.2e-13 78.2 112 42.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 4.2e-13 78.2 110 42.7
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.2e-12 76.6 112 42.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.2e-12 76.6 109 40.4
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.1e-12 75.9 108 42.6
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 2.7e-12 75.5 117 41.9
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.7e-12 75.5 105 40.0
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.7e-12 75.5 106 42.5
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 3.6e-12 75.1 123 39.0
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.6e-12 75.1 106 39.6
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 6.1e-12 74.3 115 40.0
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 6.1e-12 74.3 126 41.3
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 6.1e-12 74.3 106 41.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 6.1e-12 74.3 106 41.5
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 8.0e-12 73.9 102 40.2
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.0e-11 73.6 103 48.5
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.0e-11 73.6 103 48.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.0e-11 73.6 105 41.9
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-11 73.2 114 41.2
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.3e-11 72.4 93 41.9
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 2.3e-11 72.4 116 38.8
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.0e-11 71.6 100 44.0
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.2e-11 71.2 108 41.7
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 8.8e-11 70.5 107 37.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.2e-10 70.1 105 40.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.5e-10 69.7 112 35.7
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.6e-10 68.9 111 35.1
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 9.8e-10 67.0 104 38.5
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.7e-09 66.2 106 41.5
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.8e-09 65.5 115 37.4
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.8e-09 65.5 107 40.2
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.7e-09 65.1 107 40.2
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.7e-09 65.1 106 39.6
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 4.9e-09 64.7 109 35.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 4.9e-09 64.7 112 34.8
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.9e-09 64.7 112 34.8
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.9e-09 64.7 111 34.2
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 4.9e-09 64.7 92 44.6
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.3e-09 64.3 112 34.8
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.3e-09 64.3 88 43.2
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-08 63.5 107 33.6
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.4e-08 63.2 108 37.0
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.4e-08 63.2 114 36.8
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.4e-08 63.2 123 35.8
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 3.1e-08 62.0 100 37.0
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 4.1e-08 61.6 106 36.8
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 5.4e-08 61.2 121 36.4
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 7.0e-08 60.8 72 47.2
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 7.0e-08 60.8 74 43.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.0e-08 60.8 99 37.4
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 9.2e-08 60.5 105 40.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.2e-07 60.1 97 37.1
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.6e-07 59.7 109 35.8
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.6e-07 59.7 105 33.3
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.7e-07 58.9 105 38.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 3.5e-07 58.5 118 37.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.5e-07 58.5 102 41.2
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.5e-07 58.2 125 34.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 4.5e-07 58.2 112 36.6
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.5e-07 58.2 113 36.3
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 5.9e-07 57.8 93 37.6
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 5.9e-07 57.8 106 36.8
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 5.9e-07 57.8 105 36.2
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.7e-07 57.4 114 33.3
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.7e-07 57.4 106 36.8
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-06 56.6 106 33.0
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 2.3e-06 55.8 90 37.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.9e-06 55.5 101 31.7
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 2.9e-06 55.5 89 39.3
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.9e-06 55.5 99 33.3
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 2.9e-06 55.5 106 33.0
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 5.0e-06 54.7 115 36.5
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 6.6e-06 54.3 72 44.4
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 6.6e-06 54.3 103 35.9
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 6.6e-06 54.3 97 33.0
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 6.6e-06 54.3 103 32.0
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 8.6e-06 53.9 130 32.3
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 8.6e-06 53.9 105 31.4


User provided reference genes

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