Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 6.5e-58 227.3 120 100.0
Eucgr.E04060 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.8e-53 211.8 120 92.5
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.6e-48 194.5 120 80.8
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.0e-47 191.8 120 83.3
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.1e-39 164.5 123 78.9
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.3e-37 159.8 122 70.5
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.7e-34 149.4 122 70.5
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.4e-15 86.7 127 42.5
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.8e-15 86.3 121 43.0
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 5.2e-15 84.7 128 42.2
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 8.8e-15 84.0 127 42.5
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.2e-14 83.6 135 39.3
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.5e-14 83.2 129 45.0
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.6e-14 82.4 137 42.3
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 2.6e-14 82.4 118 40.7
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 3.4e-14 82.0 122 43.4
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 4.4e-14 81.6 137 40.1
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 4.4e-14 81.6 117 40.2
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 9.8e-14 80.5 123 41.5
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 2.2e-13 79.3 129 34.1
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 2.8e-13 79.0 125 47.2
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 3.7e-13 78.6 132 38.6
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 6.3e-13 77.8 130 40.0
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 6.3e-13 77.8 132 38.6
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 8.3e-13 77.4 118 39.8
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.1e-12 77.0 134 40.3
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 1.1e-12 77.0 129 41.1
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.4e-12 76.6 124 38.7
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 1.4e-12 76.6 125 43.2
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 1.4e-12 76.6 121 39.7
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.4e-12 75.9 129 34.9
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 2.4e-12 75.9 133 42.1
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.1e-12 75.5 132 37.9
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 4.1e-12 75.1 130 35.4
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 4.1e-12 75.1 130 34.6
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.4e-12 74.7 138 41.3
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 7.0e-12 74.3 133 42.1
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.2e-11 73.6 121 39.7
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 1.6e-11 73.2 149 39.6
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.6e-11 73.2 128 38.3
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.6e-11 73.2 128 38.3
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.0e-11 72.8 130 37.7
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.0e-11 72.8 131 38.2
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 2.7e-11 72.4 120 39.2
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.7e-11 72.4 131 38.9
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.7e-11 72.4 122 39.3
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 7.7e-11 70.9 117 35.9
Sc17g0007340 Simmondsia chinensis HOM05D003074 ORTHO05D002434 7.7e-11 70.9 123 35.0
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 1.0e-10 70.5 134 36.6
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.0e-10 70.5 128 36.7
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 1.0e-10 70.5 131 43.5
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.0e-10 70.5 137 37.2
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 1.3e-10 70.1 140 34.3
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 1.7e-10 69.7 131 38.9
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 2.3e-10 69.3 123 37.4
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 2.3e-10 69.3 123 37.4
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 2.9e-10 68.9 137 34.3
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 3.8e-10 68.6 124 41.9
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 8.6e-10 67.4 120 37.5
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 1.1e-09 67.0 140 36.4
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 1.1e-09 67.0 136 34.6
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.9e-09 66.2 123 38.2
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.9e-09 66.2 115 39.1
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.5e-09 65.9 133 33.1
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 2.5e-09 65.9 121 39.7
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 3.3e-09 65.5 67 52.2
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 3.3e-09 65.5 140 32.1
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.3e-09 65.5 140 32.1
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.2e-09 65.1 140 32.1
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.2e-09 65.1 140 32.1
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 5.5e-09 64.7 129 34.9
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.5e-09 64.7 124 38.7
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 5.5e-09 64.7 119 37.8
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 5.5e-09 64.7 129 36.4
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 7.2e-09 64.3 132 31.8
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 7.2e-09 64.3 134 32.1
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 9.5e-09 63.9 132 36.4
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 9.5e-09 63.9 127 37.8
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.5e-09 63.9 123 38.2
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 9.5e-09 63.9 117 37.6
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 1.2e-08 63.5 125 39.2
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.2e-08 63.5 132 38.6
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 1.6e-08 63.2 135 33.3
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 2.8e-08 62.4 117 35.0
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.8e-08 62.4 117 41.9
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 3.6e-08 62.0 130 36.2
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 4.7e-08 61.6 100 34.0
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 4.7e-08 61.6 141 32.6
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.7e-08 61.6 118 41.5
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 4.7e-08 61.6 123 37.4
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 6.1e-08 61.2 144 34.7
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 6.1e-08 61.2 138 35.5
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.1e-08 61.2 141 31.2
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 6.1e-08 61.2 131 35.9
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 6.1e-08 61.2 118 34.7
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 8.0e-08 60.8 123 35.0
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.0e-08 60.8 132 34.8
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 8.0e-08 60.8 133 35.3
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.0e-07 60.5 138 31.2
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.0e-07 60.5 124 38.7
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 1.0e-07 60.5 134 31.3
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 1.0e-07 60.5 118 33.9
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 1.4e-07 60.1 120 34.2
Psat1g181240 Pisum sativum HOM05D008677 ORTHO05D002434 1.4e-07 60.1 140 35.7
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 1.4e-07 60.1 138 28.3
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.8e-07 59.7 133 35.3
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.8e-07 59.7 129 35.7
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.8e-07 59.7 129 35.7
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.8e-07 59.7 131 32.1
PGR042G1468 Punica granatum HOM05D003074 ORTHO05D002434 1.8e-07 59.7 128 39.8
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 2.3e-07 59.3 120 33.3
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 3.0e-07 58.9 120 33.3
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.0e-07 58.9 105 37.1
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 3.0e-07 58.9 117 35.0
MSTRG.12971 Avicennia marina HOM05D003074 ORTHO05D002434 4.0e-07 58.5 118 36.4
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 4.0e-07 58.5 126 35.7
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 5.2e-07 58.2 121 33.9
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.2e-07 58.2 127 35.4
Gohir.D06G213500 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.2e-07 58.2 125 35.2
Gorai.010G252600 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.8e-07 57.8 125 35.2
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 6.8e-07 57.8 138 30.4
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 8.9e-07 57.4 110 35.5
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 8.9e-07 57.4 123 34.1
Glyma.17G014100 Glycine max HOM05D008677 ORTHO05D002434 8.9e-07 57.4 136 32.4
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 8.9e-07 57.4 135 40.0
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 8.9e-07 57.4 117 33.3
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 8.9e-07 57.4 120 33.3
VMungo1215G0276 Vigna mungo HOM05D008677 ORTHO05D002434 8.9e-07 57.4 125 36.0
ClCG01G022040 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.2e-06 57.0 132 32.6
CsaV3_6G049100 Cucumis sativus L. HOM05D003074 ORTHO05D002434 1.2e-06 57.0 123 33.3
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 1.2e-06 57.0 122 35.2
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 1.2e-06 57.0 137 36.5
MELO3C007385.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.5e-06 56.6 128 35.2
Glyma.17G014200 Glycine max HOM05D008677 ORTHO05D002434 1.5e-06 56.6 138 32.6
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 1.5e-06 56.6 131 35.9
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 2.0e-06 56.2 124 33.1
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 2.0e-06 56.2 130 36.9
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.0e-06 56.2 118 35.6
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 2.6e-06 55.8 150 36.7
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.6e-06 55.8 124 33.1
arahy.Tifrunner.gnm1.ann1.8P9XRD Arachis hypogaea HOM05D008677 ORTHO05D002434 2.6e-06 55.8 150 33.3
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 2.6e-06 55.8 118 33.1
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 2.6e-06 55.8 118 33.1
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.6e-06 55.8 121 30.6
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.6e-06 55.8 118 35.6
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.6e-06 55.8 115 34.8
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 3.4e-06 55.5 118 36.4
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 4.4e-06 55.1 63 47.6
Gohir.A06G207800 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.4e-06 55.1 64 48.4
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 4.4e-06 55.1 120 33.3
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.7e-06 54.7 123 30.9
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.7e-06 54.7 135 34.1
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 5.7e-06 54.7 118 35.6
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 5.7e-06 54.7 63 46.0
Lalb_Chr07g0177271 Lupinus albus HOM05D008677 ORTHO05D002434 5.7e-06 54.7 142 31.7
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 7.5e-06 54.3 120 31.7
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 7.5e-06 54.3 64 42.2
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 7.5e-06 54.3 120 33.3


User provided reference genes

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