Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 6.1e-61 237.3 117 100.0
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.3e-49 197.6 118 88.1
Eucgr.E04060 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.0e-47 193.4 120 82.5
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.8e-47 191.4 120 80.8
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.9e-39 165.2 123 74.0
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.1e-38 163.3 119 73.9
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.4e-36 156.4 119 75.6
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 9.2e-17 90.5 119 46.2
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-16 90.1 123 46.3
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 2.7e-16 89.0 127 46.5
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 6.0e-16 87.8 122 45.9
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 6.0e-16 87.8 125 44.0
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 1.0e-15 87.0 117 46.2
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 1.7e-15 86.3 119 45.4
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.5e-14 83.2 121 46.3
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.9e-14 82.8 117 44.4
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.6e-14 81.3 134 38.1
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 7.3e-14 80.9 127 37.0
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 9.5e-14 80.5 123 42.3
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 9.5e-14 80.5 137 38.0
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.5e-14 80.5 127 42.5
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 9.5e-14 80.5 127 42.5
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.6e-13 79.7 131 40.5
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 2.8e-13 79.0 117 39.3
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.8e-13 79.0 118 43.2
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.8e-13 79.0 125 40.8
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 3.6e-13 78.6 114 37.7
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 6.2e-13 77.8 128 40.6
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 6.2e-13 77.8 127 40.9
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 6.2e-13 77.8 131 42.0
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 6.2e-13 77.8 136 37.5
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 6.2e-13 77.8 122 44.3
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 8.1e-13 77.4 117 41.9
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.1e-12 77.0 130 40.0
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.1e-12 77.0 127 37.8
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.1e-12 77.0 129 39.5
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.4e-12 76.6 134 40.3
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.4e-12 76.6 123 40.7
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 1.8e-12 76.3 131 39.7
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.8e-12 76.3 131 39.7
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.1e-12 75.5 130 40.8
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 4.0e-12 75.1 131 38.2
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 4.0e-12 75.1 123 39.0
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 4.0e-12 75.1 134 38.8
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 5.2e-12 74.7 116 41.4
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 5.2e-12 74.7 125 43.2
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 6.8e-12 74.3 130 38.5
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 6.8e-12 74.3 136 41.2
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 8.9e-12 73.9 134 38.1
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 8.9e-12 73.9 133 42.1
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 1.2e-11 73.6 139 36.7
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.2e-11 73.6 120 39.2
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 1.5e-11 73.2 118 44.1
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 1.5e-11 73.2 122 43.4
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 1.5e-11 73.2 114 41.2
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.0e-11 72.8 129 44.2
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 4.4e-11 71.6 141 36.2
Sc17g0007340 Simmondsia chinensis HOM05D003074 ORTHO05D002434 4.4e-11 71.6 119 37.0
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 7.5e-11 70.9 145 37.9
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 9.9e-11 70.5 128 40.6
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.3e-10 70.1 131 41.2
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 2.2e-10 69.3 142 36.6
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 2.2e-10 69.3 135 40.0
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.2e-10 69.3 132 38.6
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.9e-10 68.9 139 35.3
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.9e-10 68.9 139 35.3
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.7e-10 68.6 139 35.3
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.7e-10 68.6 139 35.3
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.9e-10 68.2 101 42.6
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 6.4e-10 67.8 130 38.5
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 8.3e-10 67.4 135 37.0
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 8.3e-10 67.4 124 39.5
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 8.3e-10 67.4 124 39.5
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 1.1e-09 67.0 143 40.6
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.1e-09 67.0 122 38.5
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 1.4e-09 66.6 114 37.7
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.9e-09 66.2 115 40.0
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.4e-09 65.9 145 35.2
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 2.4e-09 65.9 135 37.8
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 2.4e-09 65.9 116 37.9
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.1e-09 65.1 140 37.9
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 4.1e-09 65.1 124 39.5
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 4.1e-09 65.1 126 37.3
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 4.1e-09 65.1 114 36.8
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 4.1e-09 65.1 130 36.9
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 7.1e-09 64.3 134 37.3
PGR042G1468 Punica granatum HOM05D003074 ORTHO05D002434 7.1e-09 64.3 129 34.9
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 9.2e-09 63.9 66 53.0
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.2e-08 63.5 139 33.8
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 1.6e-08 63.2 124 38.7
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.6e-08 63.2 118 38.1
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 2.1e-08 62.8 118 39.0
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 2.1e-08 62.8 114 38.6
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.1e-08 62.8 124 37.9
arahy.Tifrunner.gnm1.ann1.8P9XRD Arachis hypogaea HOM05D008677 ORTHO05D002434 2.7e-08 62.4 147 37.4
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.7e-08 62.4 123 38.2
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 3.5e-08 62.0 115 38.3
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.5e-08 62.0 117 37.6
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 3.5e-08 62.0 121 34.7
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 3.5e-08 62.0 129 36.4
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 4.6e-08 61.6 114 35.1
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.6e-08 61.6 125 36.0
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.6e-08 61.6 125 36.0
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 4.6e-08 61.6 115 36.5
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 4.6e-08 61.6 139 32.4
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 4.6e-08 61.6 131 36.6
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 6.0e-08 61.2 130 36.9
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 6.0e-08 61.2 118 35.6
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 6.0e-08 61.2 130 39.2
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 6.0e-08 61.2 127 37.8
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 7.8e-08 60.8 117 38.5
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.8e-08 60.8 122 38.5
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 7.8e-08 60.8 114 34.2
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.0e-07 60.5 131 33.6
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.3e-07 60.1 125 35.2
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 1.3e-07 60.1 115 39.1
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.3e-07 60.1 111 40.5
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.7e-07 59.7 121 32.2
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.7e-07 59.7 114 38.6
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 2.3e-07 59.3 125 36.8
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 3.0e-07 58.9 117 37.6
Psat1g181240 Pisum sativum HOM05D008677 ORTHO05D002434 3.0e-07 58.9 137 35.8
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 3.9e-07 58.5 120 37.5
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 3.9e-07 58.5 121 32.2
ClCG01G022040 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.9e-07 58.5 122 35.2
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 3.9e-07 58.5 123 36.6
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 3.9e-07 58.5 119 40.3
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 3.9e-07 58.5 116 36.2
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 5.1e-07 58.2 123 35.0
Gohir.D06G213500 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.1e-07 58.2 125 35.2
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 5.1e-07 58.2 129 38.8
Sp7g20110 Schrenkiella parvula HOM05D003074 ORTHO05D002434 5.1e-07 58.2 126 36.5
CsaV3_6G049100 Cucumis sativus L. HOM05D003074 ORTHO05D002434 6.6e-07 57.8 122 35.2
Gorai.010G252600 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.6e-07 57.8 125 35.2
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 8.6e-07 57.4 119 35.3
Lalb_Chr07g0177271 Lupinus albus HOM05D008677 ORTHO05D002434 8.6e-07 57.4 144 33.3
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.6e-07 57.4 114 38.6
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.1e-06 57.0 120 31.7
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.1e-06 57.0 133 36.8
TPR.G9935 Trifolium pratense HOM05D008677 ORTHO05D002434 1.1e-06 57.0 134 35.1
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.5e-06 56.6 134 31.3
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.5e-06 56.6 88 42.0
Sed0016637 Sechium edule HOM05D003074 ORTHO05D002434 1.5e-06 56.6 127 34.6
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.5e-06 56.6 114 38.6
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 1.9e-06 56.2 149 35.6
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.9e-06 56.2 123 36.6
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.9e-06 56.2 114 36.0
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.9e-06 56.2 114 36.0
Gohir.A06G207800 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.9e-06 56.2 64 48.4
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.5e-06 55.8 126 34.9
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 3.3e-06 55.5 100 34.0
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 3.3e-06 55.5 99 40.4
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 3.3e-06 55.5 114 36.0
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 4.3e-06 55.1 101 38.6
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 4.3e-06 55.1 115 37.4
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 5.6e-06 54.7 101 35.6
MELO3C007385.2 Cucumis melo HOM05D003074 ORTHO05D002434 5.6e-06 54.7 121 33.9
Thhalv10026602m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 5.6e-06 54.7 75 46.7
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 5.6e-06 54.7 114 36.8
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 5.6e-06 54.7 135 34.1
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 7.3e-06 54.3 122 37.7
Migut.H01829 Erythranthe guttata HOM05D003074 ORTHO05D002434 7.3e-06 54.3 138 35.5
Glyma.17G014100 Glycine max HOM05D008677 ORTHO05D002434 7.3e-06 54.3 135 32.6
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 7.3e-06 54.3 124 34.7
Sopen02g011120 Solanum pennellii HOM05D003074 ORTHO05D002434 7.3e-06 54.3 73 39.7
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 9.5e-06 53.9 123 31.7
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 9.5e-06 53.9 116 34.5


User provided reference genes

Program Settings