Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 0.0e+00 2489.5 1296 100.0
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.7e-282 974.5 1309 48.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 8.5e-281 971.1 1342 48.3
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 8.8e-278 961.1 1345 47.3
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-276 956.8 1349 48.0
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 8.3e-276 954.5 1349 48.0
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 3.1e-275 952.6 1328 48.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.1e-272 944.1 1330 47.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 4.7e-271 938.7 1362 46.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 7.5e-269 931.4 1330 47.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 3.5e-266 922.5 1342 47.1
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 7.8e-266 921.4 1347 46.1
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.9e-264 916.8 1310 46.9
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 8.0e-263 911.4 1330 46.3
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 3.1e-262 909.4 1347 46.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.5e-258 896.0 1380 45.7
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 6.6e-257 891.7 1219 47.2
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 2.5e-256 889.8 1344 45.1
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 9.5e-256 887.9 1350 45.4
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 4.4e-253 879.0 1332 45.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 7.5e-253 878.2 1330 44.7
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.1e-251 872.5 1325 44.9
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.1e-250 870.2 1349 44.6
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.6e-250 869.0 1324 45.0
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 6.0e-250 868.6 1289 46.6
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.3e-249 867.5 1324 45.1
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 5.1e-249 865.5 1338 44.7
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 3.3e-248 862.8 1319 45.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 3.1e-246 856.3 1307 44.4
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 5.2e-246 855.5 1333 43.9
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 2.6e-245 853.2 1308 44.2
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 8.4e-244 848.2 1335 43.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 5.1e-241 839.0 1325 44.2
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.5e-240 837.4 1315 44.1
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 4.3e-240 835.9 1341 43.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.1e-239 831.6 1307 44.2
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.1e-238 829.7 1320 42.3
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 9.9e-237 824.7 1359 42.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.7e-234 816.6 1352 42.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 9.0e-230 801.6 1242 45.2
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 3.4e-229 799.7 1148 46.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 9.6e-224 781.6 1215 43.9
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 2.8e-223 780.0 1245 44.3
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 3.6e-223 779.6 1341 42.1
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 8.1e-223 778.5 1209 43.3
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 9.0e-222 775.0 1247 43.6
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 7.6e-221 771.9 1163 45.1
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 6.4e-220 768.8 1202 43.5
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 5.5e-219 765.8 1176 44.7
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 3.0e-217 760.0 1222 44.8
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.6e-216 755.7 1211 44.8
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.8e-215 753.4 1185 44.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 3.2e-211 740.0 1311 39.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.2e-211 739.6 1336 42.1
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.7e-210 736.9 1345 40.4
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.1e-208 731.5 1173 43.6
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 5.7e-208 729.2 1149 44.3
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 2.2e-204 717.2 1290 41.7
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 6.5e-204 715.7 1271 42.1
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.9e-203 714.1 1350 40.4
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.1e-198 698.4 1344 38.4
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 3.1e-198 696.8 1365 38.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.2e-196 690.6 971 45.6
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 3.8e-196 689.9 1279 40.7
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.2e-194 684.9 1178 42.5
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.1e-192 678.3 1325 40.1
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.1e-192 678.3 1332 40.1
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.1e-190 670.2 1163 42.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.1e-190 669.8 1188 41.7
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.3e-188 664.8 1242 39.4
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.9e-187 661.0 1196 41.0
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.9e-186 655.6 1220 41.0
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 4.4e-184 649.8 1306 38.7
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.7e-173 614.0 1371 36.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.1e-171 608.6 1175 39.7
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.5e-171 607.4 1185 39.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 4.2e-163 580.1 1139 40.7
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.2e-162 578.6 1342 35.9
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.1e-162 576.2 1172 39.5
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.0e-161 575.5 1286 38.2
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.7e-159 568.2 1259 37.8
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.1e-158 565.5 1221 38.8
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.4e-158 565.1 1130 38.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 5.4e-158 563.1 1175 39.2
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.3e-156 557.8 1274 37.9
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 3.8e-156 557.0 1141 40.0
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 4.3e-155 553.5 1176 38.4
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 4.3e-155 553.5 1176 38.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 9.5e-155 552.4 1357 34.9
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.2e-154 552.0 1265 36.7
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 4.0e-153 547.0 1212 38.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.0e-152 544.7 1343 36.4
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.6e-152 544.3 1149 37.7
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 3.4e-152 543.9 1088 39.1
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.2e-146 525.4 1372 34.4
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 6.6e-140 503.1 1014 38.9
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.1e-139 502.3 1132 37.7
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.7e-135 488.4 970 38.5
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-133 480.7 621 49.9
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.3e-129 468.0 872 40.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 7.6e-128 463.0 547 52.8
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.9e-115 421.8 842 38.8
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 6.9e-113 413.3 664 43.1
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.5e-112 412.1 929 35.8
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.4e-105 388.3 527 49.3
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.9e-102 378.6 788 38.1
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.5e-96 359.0 1292 31.0
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.6e-93 349.0 537 44.5
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.6e-85 322.4 567 40.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.6e-85 321.2 510 44.9
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.1e-85 320.5 506 44.1
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 5.7e-83 313.9 486 43.2
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 5.7e-83 313.9 528 45.3
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 5.1e-76 290.8 331 52.0
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.1e-73 283.1 403 48.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.7e-69 268.5 733 32.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 4.1e-65 254.6 297 50.5
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 8.8e-52 210.3 499 35.3
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 3.4e-51 208.4 841 28.8
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-49 202.2 532 32.9
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 9.1e-49 200.3 348 39.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.5e-48 198.4 532 32.5
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-46 193.4 261 44.8
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.0e-44 186.8 642 30.8
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.0e-43 182.6 152 58.6
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.4e-43 181.8 237 46.8
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.5e-40 171.8 590 31.5
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 9.5e-38 163.7 235 45.5
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 9.8e-35 153.7 496 30.0
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.7e-34 152.9 521 30.7
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 1.8e-33 149.4 489 31.7
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.7e-31 142.9 719 25.7
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 8.9e-28 130.6 164 58.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.4e-27 128.6 180 53.9
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.6e-21 108.6 228 36.0
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.4e-19 101.7 128 50.0
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.4e-17 95.9 506 27.3
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.2e-17 94.0 122 58.2
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.6e-16 93.2 705 25.1
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.3e-14 85.1 75 54.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-10 72.0 161 32.3
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.1e-09 70.5 53 66.0
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.3e-07 63.5 130 39.2


User provided reference genes

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