Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.8e-37 157.5 73 100.0
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 8.6e-21 103.2 50 92.0
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.5e-20 99.8 50 88.0
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.0e-18 96.3 50 86.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.0e-18 96.3 50 86.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.0e-18 96.3 50 86.0
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 8.9e-18 93.2 50 80.0
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 2.6e-17 91.7 50 80.0
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 9.8e-17 89.7 50 80.0
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.7e-16 89.0 50 74.0
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.2e-16 88.6 57 70.2
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.2e-16 88.6 50 74.0
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 3.7e-16 87.8 50 78.0
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 3.7e-16 87.8 50 78.0
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 4.9e-16 87.4 50 70.0
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.9e-16 87.4 50 78.0
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.9e-16 87.4 50 78.0
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 4.9e-16 87.4 50 78.0
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.4e-15 85.9 50 76.0
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 1.8e-15 85.5 49 75.5
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 2.4e-15 85.1 50 76.0
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 4.1e-15 84.3 50 74.0
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 5.4e-15 84.0 50 72.0
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 5.4e-15 84.0 50 74.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 5.4e-15 84.0 50 74.0
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 7.0e-15 83.6 50 74.0
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.2e-14 82.8 62 62.9
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.2e-14 82.8 49 71.4
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.6e-14 82.4 50 70.0
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.6e-14 82.4 50 78.0
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.6e-14 82.4 50 80.0
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.6e-14 82.4 50 80.0
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.0e-14 82.0 50 72.0
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.7e-14 81.6 57 68.4
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 2.7e-14 81.6 50 70.0
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 3.5e-14 81.3 50 74.0
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 4.6e-14 80.9 50 74.0
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 5.9e-14 80.5 50 68.0
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 5.9e-14 80.5 59 64.4
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 5.9e-14 80.5 50 72.0
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 7.8e-14 80.1 50 74.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.0e-13 79.7 50 70.0
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 2.3e-13 78.6 50 72.0
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 2.3e-13 78.6 50 74.0
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 2.3e-13 78.6 50 76.0
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.9e-13 78.2 51 70.6
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 3.9e-13 77.8 54 66.7
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 3.9e-13 77.8 54 66.7
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 5.0e-13 77.4 43 76.7
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 6.6e-13 77.0 42 78.6
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 6.6e-13 77.0 50 72.0
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.5e-12 75.9 50 72.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.5e-12 75.9 50 70.0
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.5e-12 75.1 50 68.0
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 3.3e-12 74.7 50 68.0
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 3.3e-12 74.7 50 66.0
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 3.3e-12 74.7 51 66.7
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 5.6e-12 73.9 50 70.0
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 5.6e-12 73.9 51 72.5
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 5.6e-12 73.9 58 60.3
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 7.3e-12 73.6 51 70.6
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 7.3e-12 73.6 59 64.4
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 9.5e-12 73.2 50 70.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.6e-11 72.4 51 70.6
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.6e-11 72.4 50 72.0
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 1.6e-11 72.4 50 70.0
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.6e-11 72.4 50 68.0
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 2.1e-11 72.0 50 74.0
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.1e-11 72.0 51 68.6
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 2.8e-11 71.6 50 70.0
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 2.8e-11 71.6 51 68.6
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.8e-11 71.6 50 68.0
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 2.8e-11 71.6 50 74.0
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 2.8e-11 71.6 50 74.0
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.6e-11 71.2 59 62.7
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.6e-11 71.2 59 62.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 3.6e-11 71.2 41 73.2
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 4.7e-11 70.9 50 66.0
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 4.7e-11 70.9 50 68.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 6.1e-11 70.5 50 60.0
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 6.1e-11 70.5 50 64.0
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 8.0e-11 70.1 50 70.0
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 1.0e-10 69.7 52 69.2
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.4e-10 69.3 50 72.0
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.4e-10 69.3 50 68.0
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.3e-10 68.6 52 67.3
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 2.3e-10 68.6 52 67.3
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 3.1e-10 68.2 52 69.2
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 3.1e-10 68.2 52 67.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 3.1e-10 68.2 52 65.4
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 3.1e-10 68.2 53 64.2
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 4.0e-10 67.8 50 70.0
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 5.2e-10 67.4 54 59.3
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 5.2e-10 67.4 50 70.0
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.2e-10 67.4 52 67.3
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 6.8e-10 67.0 52 65.4
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 6.8e-10 67.0 50 62.0
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.2e-09 66.2 44 63.6
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 2.6e-09 65.1 50 66.0
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 3.4e-09 64.7 50 66.0
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 7.5e-09 63.5 41 70.7
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 7.5e-09 63.5 53 62.3
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.7e-08 61.2 50 62.0
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.6e-06 55.8 59 50.8
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.6e-06 55.8 59 50.8


User provided reference genes

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