Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.3e-105 386.3 191 100.0
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 8.0e-103 377.1 191 96.3
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 8.0e-103 377.1 190 95.8
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.0e-102 376.7 191 94.8
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.4e-102 376.3 189 96.3
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.3e-102 375.6 191 94.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 3.1e-102 375.2 191 94.2
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 5.2e-102 374.4 191 95.3
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 5.2e-102 374.4 191 94.8
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 8.9e-102 373.6 191 94.8
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 8.9e-102 373.6 191 94.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 8.9e-102 373.6 191 93.7
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.2e-101 373.2 190 95.8
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.5e-101 372.9 191 94.8
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 2.0e-101 372.5 191 94.8
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.0e-101 372.5 191 93.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 2.6e-101 372.1 191 93.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 95.3
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 93.7
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 95.3
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.4e-101 371.7 189 93.7
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.4e-101 371.7 190 93.7
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.4e-101 371.7 190 93.7
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 4.4e-101 371.3 191 94.8
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 94.2
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 94.2
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 94.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 5.8e-101 370.9 191 93.7
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 7.5e-101 370.5 191 93.7
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 7.5e-101 370.5 191 93.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 7.5e-101 370.5 191 93.7
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 94.8
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 94.8
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 94.8
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 93.2
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.3e-100 369.8 191 95.3
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 94.2
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 93.7
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.7e-100 369.4 188 94.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.7e-100 369.4 189 93.7
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 93.7
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 92.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 94.2
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.2e-100 369.0 189 93.7
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 94.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 92.7
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 93.2
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.4e-100 367.5 188 95.2
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 92.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 93.2
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 8.3e-100 367.1 195 93.3
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 92.1
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 91.6
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 92.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 92.7
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.2e-99 365.2 188 92.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 5.4e-99 364.4 189 93.1
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 93.7
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 92.1
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 93.2
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.5
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 89.5
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 90.1
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.7e-97 359.4 210 84.3
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 90.6
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.7e-97 359.4 216 83.3
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 89.5
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.6
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.5e-96 356.3 201 88.1
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 89.5
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 3.3e-96 355.1 188 90.4
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 4.3e-96 354.8 188 90.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 7.3e-96 354.0 201 87.1
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 7.3e-96 354.0 188 92.0
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 9.5e-96 353.6 195 89.2
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.6e-95 352.8 198 86.4
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.1e-95 352.4 189 88.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.8e-95 352.1 189 89.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 3.6e-95 351.7 191 88.0
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-94 350.1 232 76.7
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 86.9
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.4e-94 349.7 191 87.4
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.4e-94 349.7 188 88.3
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.8e-94 349.4 188 88.3
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.8e-94 349.4 214 81.8
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 4.0e-94 348.2 188 87.8
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 87.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 6.8e-94 347.4 183 91.3
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 87.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 8.9e-94 347.1 191 84.8
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 4.4e-93 344.7 188 87.8
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 6.4e-92 340.9 191 83.8
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.2e-91 338.6 191 82.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 6.0e-90 334.3 173 94.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 2.3e-89 332.4 189 81.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.9e-89 331.6 181 90.1
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.9e-89 331.6 181 90.1
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 6.6e-89 330.9 191 80.1
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 6.6e-89 330.9 173 90.2
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.5e-88 329.7 189 80.4
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.1e-86 323.6 191 82.2
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.1e-86 323.6 191 78.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 7.6e-85 317.4 160 95.0
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.7e-84 316.2 167 90.4
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.9e-84 314.7 188 76.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 76.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 2.7e-82 308.9 160 90.6
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 3.0e-81 305.4 160 90.6
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 6.9e-78 294.3 161 88.2
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 3.2e-75 285.4 171 83.0
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.3e-73 279.3 209 69.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.1e-67 260.4 188 67.6
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 8.7e-65 250.8 140 86.4
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.4e-62 242.7 190 63.2
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.2e-58 230.3 183 60.7
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.0e-57 227.3 149 75.8
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.5e-56 223.4 206 53.4
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 4.3e-56 221.9 113 92.9
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 9.6e-56 220.7 129 84.5
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 9.0e-54 214.2 112 92.0
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 3.4e-53 212.2 109 93.6
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 8.4e-52 207.6 109 92.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.9e-51 206.5 106 88.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 7.1e-51 204.5 109 92.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 9.3e-51 204.1 158 63.9
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.1e-38 164.1 82 92.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.4e-38 162.9 82 91.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 3.1e-38 162.5 80 93.8
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.1e-38 162.2 82 91.5
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 4.1e-38 162.2 84 92.9
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.3e-38 161.8 81 91.4
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.2e-35 152.5 81 90.1
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.9e-34 147.9 155 48.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.0e-32 143.3 74 89.2
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.7e-31 140.2 71 90.1
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 3.1e-30 136.0 71 88.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.0e-29 133.3 87 78.2
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.6e-26 123.6 68 83.8
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.6e-26 123.6 68 83.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 4.7e-26 122.1 68 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 6.1e-18 95.1 51 82.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.6e-16 89.7 47 83.0
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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