Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 5.0e-40 167.2 75 100.0
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.3e-27 125.9 75 76.0
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 2.0e-25 118.6 73 65.8
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 3.2e-23 111.3 70 65.7
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 9.4e-23 109.8 69 65.2
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 1.8e-21 105.5 75 58.7
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 1.8e-21 105.5 70 60.0
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 2.3e-21 105.1 74 60.8
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 3.9e-21 104.4 70 61.4
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 5.2e-21 104.0 69 60.9
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 5.2e-21 104.0 70 61.4
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 6.7e-21 103.6 69 62.3
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 2.0e-20 102.1 76 60.5
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 2.0e-20 102.1 71 57.7
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 2.6e-20 101.7 76 60.5
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 3.3e-20 101.3 69 60.9
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 4.4e-20 100.9 73 58.9
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 7.4e-20 100.1 74 59.5
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.8e-19 98.2 71 60.6
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 2.8e-19 98.2 71 60.6
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 4.8e-19 97.4 76 56.6
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 8.2e-19 96.7 71 59.2
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 2.4e-18 95.1 70 52.9
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 3.1e-18 94.7 70 52.9
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 3.1e-18 94.7 75 56.0
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 4.1e-18 94.4 73 58.9
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 1.2e-17 92.8 70 51.4
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.6e-17 92.4 67 59.7
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.6e-17 92.4 75 56.0
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.0e-17 92.0 69 59.4
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.6e-17 91.7 71 53.5
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 4.5e-17 90.9 69 55.1
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 5.9e-17 90.5 70 54.3
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 7.7e-17 90.1 68 51.5
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 1.0e-16 89.7 68 50.0
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 1.0e-16 89.7 68 50.0
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 1.3e-16 89.4 72 47.2
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 1.7e-16 89.0 71 53.5
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 1.7e-16 89.0 68 52.9
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 2.2e-16 88.6 63 55.6
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 3.8e-16 87.8 69 52.2
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.1e-15 86.3 75 52.0
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 1.1e-15 86.3 73 50.7
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 1.5e-15 85.9 73 46.6
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 1.9e-15 85.5 68 52.9
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 3.2e-15 84.7 61 55.7
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 7.2e-15 83.6 70 51.4
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 1.2e-14 82.8 68 48.5
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 2.1e-14 82.0 69 50.7
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 2.1e-14 82.0 69 50.7
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 2.1e-14 82.0 69 50.7
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 4.7e-14 80.9 69 50.7
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 4.7e-14 80.9 69 50.7
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 8.0e-14 80.1 79 50.6
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 2.3e-13 78.6 69 49.3
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 6.8e-13 77.0 69 46.4
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 5.7e-12 73.9 83 45.8
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 7.5e-12 73.6 70 45.7
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 9.7e-12 73.2 66 47.0
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 1.7e-11 72.4 71 45.1
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 2.8e-11 71.6 69 44.9
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 2.8e-11 71.6 54 53.7
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 3.7e-11 71.2 69 44.9
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 3.7e-11 71.2 69 44.9
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 1.4e-10 69.3 69 43.5
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 5.3e-10 67.4 66 45.5
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 5.3e-10 67.4 66 45.5
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 5.3e-10 67.4 66 45.5
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 5.3e-10 67.4 67 41.8
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 1.6e-09 65.9 69 43.5
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 1.6e-09 65.9 69 43.5
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 2.0e-09 65.5 68 41.2
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 4.5e-09 64.3 60 45.0
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 1.0e-08 63.2 60 45.0
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 2.2e-08 62.0 60 45.0
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 5.0e-08 60.8 60 43.3
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 5.0e-08 60.8 60 43.3
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 3.2e-07 58.2 69 39.1
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 4.2e-07 57.8 66 36.4
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 4.7e-06 54.3 63 34.9


User provided reference genes

Program Settings