Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03844 Eucalyptus grandis HOM05D002645 ORTHO05D002741 7.9e-89 330.5 174 100.0
Eucgr.E03841 Eucalyptus grandis HOM05D002645 ORTHO05D002741 7.7e-36 154.5 142 61.3
Eucgr.E03842 Eucalyptus grandis HOM05D002645 ORTHO05D002741 1.9e-18 96.7 65 76.9
MSTRG.13104 Avicennia marina HOM05D002645 ORTHO05D002741 9.8e-15 84.3 135 45.2
Atru.chr1.2243 Acer truncatum HOM05D002645 ORTHO05D002741 7.0e-13 78.2 125 41.6
Potri.006G003900 Populus trichocarpa HOM05D002645 ORTHO05D002741 9.2e-13 77.8 122 44.3
CiPaw.09G109600 Carya illinoinensis HOM05D002645 ORTHO05D002741 7.8e-12 74.7 119 44.5
PGR042G2084 Punica granatum HOM05D002645 ORTHO05D002741 1.7e-11 73.6 132 40.9
Sabra06G0003300 Salix brachista HOM05D002645 ORTHO05D002741 3.0e-11 72.8 151 37.7
EL10Ac8g20271 Beta vulgaris HOM05D002645 ORTHO05D002741 3.9e-11 72.4 64 57.8
PGR042G0736 Punica granatum HOM05D002645 ORTHO05D002741 6.6e-11 71.6 117 41.0
CsaV3_6G048200 Cucumis sativus L. HOM05D002645 ORTHO05D002741 1.1e-10 70.9 133 40.6
Lj6g0025630 Lotus japonicus HOM05D002645 ORTHO05D002741 1.1e-10 70.9 116 41.4
ClCG01G021190 Citrullus lanatus HOM05D002645 ORTHO05D002741 3.3e-10 69.3 129 40.3
Manes.09G084200 Manihot esculenta HOM05D002645 ORTHO05D002741 4.3e-10 68.9 108 45.4
Sed0027781 Sechium edule HOM05D002645 ORTHO05D002741 4.3e-10 68.9 134 41.0
TWI63G0163 Tripterygium wilfordii HOM05D002645 ORTHO05D002741 4.3e-10 68.9 108 45.4
vmacro03600 Vaccinium macrocarpon HOM05D002645 ORTHO05D002741 7.3e-10 68.2 117 41.9
MELO3C008004.2 Cucumis melo HOM05D002645 ORTHO05D002741 1.6e-09 67.0 134 37.3
CAN.G1473.3 Capsicum annuum HOM05D002645 ORTHO05D002741 2.1e-09 66.6 136 35.3
Cfa000025 Carpinus fangiana HOM05D002645 ORTHO05D002741 2.1e-09 66.6 131 37.4
Gohir.A06G203701 Gossypium hirsutum HOM05D002645 ORTHO05D002741 3.6e-09 65.9 114 41.2
Actinidia14194 Actinidia chinensis HOM05D002645 ORTHO05D002741 6.2e-09 65.1 111 39.6
PGR004G1691 Punica granatum HOM05D002645 ORTHO05D002741 8.0e-09 64.7 95 45.3
Gohir.D06G218100 Gossypium hirsutum HOM05D002645 ORTHO05D002741 1.8e-08 63.5 114 39.5
AUR62012858 Chenopodium quinoa HOM05D002645 ORTHO05D002741 2.3e-08 63.2 64 53.1
Lj2g0018534 Lotus japonicus HOM05D002645 ORTHO05D002741 2.3e-08 63.2 106 40.6
Haze_07030 Corylus avellana HOM05D002645 ORTHO05D002741 3.1e-08 62.8 120 41.7
Gorai.010G248200 Gossypium raimondii HOM05D002645 ORTHO05D002741 3.1e-08 62.8 113 38.1
Glyma.15G121100 Glycine max HOM05D002645 ORTHO05D002741 4.0e-08 62.4 106 41.5
PGSC0003DMG400026054 Solanum tuberosum HOM05D002645 ORTHO05D002741 4.0e-08 62.4 74 44.6
Sopen01g036000 Solanum pennellii HOM05D002645 ORTHO05D002741 5.2e-08 62.0 71 45.1
Ciclev10016013m.g Citrus clementina HOM05D002645 ORTHO05D002741 6.8e-08 61.6 64 48.4
Duzib192G0266 Durio zibethinus HOM05D002645 ORTHO05D002741 6.8e-08 61.6 114 44.7
Solyc04g015120.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 6.8e-08 61.6 68 47.1
Sopen04g007140 Solanum pennellii HOM05D002645 ORTHO05D002741 6.8e-08 61.6 68 47.1
MD05G1362400 Malus domestica HOM05D002645 ORTHO05D002741 8.9e-08 61.2 116 37.1
AUR62021807 Chenopodium quinoa HOM05D002645 ORTHO05D002741 1.5e-07 60.5 132 35.6
Ah.09g233840 Amaranthus hybridus HOM05D002645 ORTHO05D002741 2.0e-07 60.1 134 35.1
arahy.Tifrunner.gnm1.ann1.P3E3V7 Arachis hypogaea HOM05D002645 ORTHO05D002741 2.0e-07 60.1 58 55.2
CAN.G1263.3 Capsicum annuum HOM05D002645 ORTHO05D002741 2.0e-07 60.1 107 36.4
arahy.Tifrunner.gnm1.ann1.QD9R4Y Arachis hypogaea HOM05D002645 ORTHO05D002741 2.6e-07 59.7 98 41.8
Nitab4.5_0006294g0070 Nicotiana tabacum HOM05D002645 ORTHO05D002741 2.6e-07 59.7 69 46.4
Peaxi162Scf00827g00412 Petunia axillaris HOM05D002645 ORTHO05D002741 2.6e-07 59.7 103 36.9
SalBow1G0992 Salvia bowleyana HOM05D002645 ORTHO05D002741 2.6e-07 59.7 60 55.0
SalBow1G2284 Salvia bowleyana HOM05D002645 ORTHO05D002741 2.6e-07 59.7 60 55.0
Psat0s3230g0080 Pisum sativum HOM05D002645 ORTHO05D002741 3.4e-07 59.3 120 36.7
Psat0s473g0040 Pisum sativum HOM05D002645 ORTHO05D002741 3.4e-07 59.3 120 37.5
QL05p066957 Quercus lobata HOM05D002645 ORTHO05D002741 3.4e-07 59.3 138 34.8
QL05p067304 Quercus lobata HOM05D002645 ORTHO05D002741 3.4e-07 59.3 138 34.8
Lj4g0023840 Lotus japonicus HOM05D002645 ORTHO05D002741 4.4e-07 58.9 122 35.2
Sc17g0008020 Simmondsia chinensis HOM05D002645 ORTHO05D002741 4.4e-07 58.9 151 29.8
arahy.Tifrunner.gnm1.ann1.ZTBZ6L Arachis hypogaea HOM05D002645 ORTHO05D002741 5.8e-07 58.5 58 55.2
CsaV3_1G015590 Cucumis sativus L. HOM05D002645 ORTHO05D002741 7.5e-07 58.2 66 48.5
Prupe.4G003000 Prunus persica HOM05D002645 ORTHO05D002741 7.5e-07 58.2 46 67.4
VMungo0540G0592 Vigna mungo HOM05D002645 ORTHO05D002741 7.5e-07 58.2 127 37.8
Glyma.07G268800 Glycine max HOM05D002645 ORTHO05D002741 9.8e-07 57.8 112 33.9
Lalb_Chr07g0176911 Lupinus albus HOM05D002645 ORTHO05D002741 9.8e-07 57.8 64 45.3
PGSC0003DMG400019746 Solanum tuberosum HOM05D002645 ORTHO05D002741 9.8e-07 57.8 68 44.1
arahy.Tifrunner.gnm1.ann1.28F7LT Arachis hypogaea HOM05D002645 ORTHO05D002741 2.2e-06 56.6 100 39.0
Lj6g0007328 Lotus japonicus HOM05D002645 ORTHO05D002741 2.9e-06 56.2 103 39.8
Nitab4.5_0000147g0400 Nicotiana tabacum HOM05D002645 ORTHO05D002741 2.9e-06 56.2 68 44.1
Phvul.003G088000 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 2.9e-06 56.2 125 34.4
MELO3C026093.2 Cucumis melo HOM05D002645 ORTHO05D002741 4.9e-06 55.5 64 48.4
Glyma.17G005000 Glycine max HOM05D002645 ORTHO05D002741 4.9e-06 55.5 47 55.3
Psat0s3230g0120 Pisum sativum HOM05D002645 ORTHO05D002741 4.9e-06 55.5 64 48.4
RcHm_v2.0_Chr5g0000401 Rosa chinensis HOM05D002645 ORTHO05D002741 4.9e-06 55.5 113 34.5
TPR.G5943 Trifolium pratense HOM05D002645 ORTHO05D002741 4.9e-06 55.5 136 32.4
ClCG01G011280 Citrullus lanatus HOM05D002645 ORTHO05D002741 6.4e-06 55.1 64 45.3
FvH4_3g00270 Fragaria vesca HOM05D002645 ORTHO05D002741 6.4e-06 55.1 57 50.9
GSVIVG01002204001 Vitis vinifera HOM05D002645 ORTHO05D002741 6.4e-06 55.1 64 57.8
Actinidia02281 Actinidia chinensis HOM05D002645 ORTHO05D002741 8.3e-06 54.7 50 56.0
Lj4g0000891 Lotus japonicus HOM05D002645 ORTHO05D002741 8.3e-06 54.7 117 35.0


User provided reference genes

Program Settings