Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 9.3e-76 287.0 163 100.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-18 95.1 91 49.5
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.6e-17 92.8 86 52.3
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.6e-17 92.8 90 50.0
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.4e-17 92.0 90 50.0
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.4e-17 92.0 86 48.8
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.8e-17 91.7 92 51.1
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.5e-17 91.3 85 48.2
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.5e-17 91.3 91 47.3
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-16 90.5 90 46.7
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-16 90.1 88 50.0
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.2e-16 89.7 90 50.0
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 3.7e-16 89.0 86 54.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 6.4e-16 88.2 52 71.2
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.1e-15 87.4 93 47.3
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.4e-15 87.0 87 49.4
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-15 87.0 89 44.9
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-15 86.3 89 44.9
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.4e-15 86.3 90 46.7
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-15 86.3 87 46.0
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-15 85.9 50 72.0
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.4e-15 85.1 85 45.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.4e-15 85.1 85 45.9
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.0e-15 84.7 50 62.0
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 7.0e-15 84.7 54 61.1
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.0e-15 84.7 89 43.8
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 9.2e-15 84.3 75 48.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 9.2e-15 84.3 91 44.0
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 9.2e-15 84.3 93 49.5
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.2e-14 84.0 90 43.3
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-14 83.6 92 43.5
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-14 83.2 54 59.3
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-14 83.2 85 45.9
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 3.5e-14 82.4 55 60.0
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.5e-14 82.4 50 66.0
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.0e-14 81.6 88 44.3
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 6.0e-14 81.6 51 58.8
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 7.8e-14 81.3 88 44.3
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.0e-13 80.9 83 44.6
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.0e-13 80.9 62 53.2
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.0e-13 80.9 89 42.7
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.3e-13 80.5 90 48.9
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.7e-13 80.1 89 41.6
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.7e-13 80.1 50 64.0
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-13 79.7 88 43.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-13 79.7 88 43.2
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-13 79.7 89 42.7
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.0e-13 79.3 52 63.5
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 3.9e-13 79.0 90 43.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.9e-13 79.0 85 45.9
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.0e-13 78.6 49 63.3
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.0e-13 78.6 85 45.9
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 5.0e-13 78.6 91 45.1
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 8.6e-13 77.8 89 40.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 8.6e-13 77.8 65 47.7
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 8.6e-13 77.8 89 40.4
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.6e-13 77.8 89 40.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.6e-13 77.8 49 61.2
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.1e-12 77.4 90 42.2
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-12 77.0 88 45.5
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.5e-12 77.0 57 57.9
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.9e-12 76.6 88 46.6
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.9e-12 76.6 90 42.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.9e-12 76.6 89 42.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.5e-12 76.3 89 39.3
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.3e-12 75.9 49 59.2
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.3e-12 75.9 89 40.4
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.3e-12 75.5 85 40.0
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.3e-12 75.5 50 58.0
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 4.3e-12 75.5 88 43.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.6e-12 75.1 91 42.9
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.3e-12 74.7 85 41.2
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 7.3e-12 74.7 50 56.0
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.3e-12 74.7 91 42.9
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 7.3e-12 74.7 51 56.9
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 9.5e-12 74.3 90 40.0
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.2e-11 73.9 48 60.4
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-11 73.6 91 41.8
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.6e-11 73.6 88 45.5
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 2.1e-11 73.2 89 39.3
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.8e-11 72.8 50 54.0
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.8e-11 72.8 48 58.3
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.8e-11 72.8 48 58.3
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-11 72.8 55 54.5
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.8e-11 72.8 51 49.0
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.6e-11 72.4 90 38.9
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.6e-11 72.4 91 40.7
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.7e-11 72.0 48 60.4
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.7e-11 72.0 48 60.4
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 4.7e-11 72.0 51 52.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 4.7e-11 72.0 51 52.9
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.7e-11 72.0 49 59.2
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 4.7e-11 72.0 86 40.7
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 4.7e-11 72.0 60 45.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.2e-11 71.6 88 39.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.2e-11 71.6 88 39.8
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.2e-11 71.6 81 46.9
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 8.0e-11 71.2 85 41.2
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.1e-10 70.9 85 40.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-10 70.9 90 38.9
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.1e-10 70.9 53 49.1
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.4e-10 70.5 90 40.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-10 70.1 90 40.0
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.3e-10 69.7 85 41.2
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.3e-10 69.7 49 53.1
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.1e-10 69.3 85 38.8
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.1e-10 69.3 87 39.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.1e-10 69.3 50 56.0
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 4.0e-10 68.9 94 38.3
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 4.0e-10 68.9 53 47.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 4.0e-10 68.9 89 36.0
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 4.0e-10 68.9 60 45.0
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 5.2e-10 68.6 58 48.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.8e-10 68.2 85 40.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-10 68.2 52 48.1
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 6.8e-10 68.2 53 45.3
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.9e-10 67.8 89 36.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 8.9e-10 67.8 51 45.1
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-09 67.4 65 43.1
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-09 67.4 89 32.6
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-09 67.4 65 43.1
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-09 67.4 65 43.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.2e-09 67.4 49 46.9
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-09 67.4 49 53.1
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-09 67.0 65 47.7
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-09 67.0 93 37.6
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.0e-09 66.6 51 45.1
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.0e-09 66.6 50 50.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.0e-09 66.6 52 46.2
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.6e-09 66.2 53 45.3
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 2.6e-09 66.2 89 36.0
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.6e-09 66.2 52 46.2
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.4e-09 65.9 50 50.0
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-09 65.9 89 37.1
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 4.4e-09 65.5 88 36.4
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-09 65.5 89 31.5
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-09 65.5 53 49.1
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 4.4e-09 65.5 48 47.9
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 4.4e-09 65.5 49 51.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 4.4e-09 65.5 49 51.0
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.8e-09 65.1 93 35.5
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 5.8e-09 65.1 89 34.8
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 7.5e-09 64.7 88 37.5
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 7.5e-09 64.7 52 48.1
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 9.8e-09 64.3 51 47.1
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 9.8e-09 64.3 86 37.2
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.8e-09 64.3 89 34.8
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 9.8e-09 64.3 50 50.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 9.8e-09 64.3 47 53.2
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.3e-08 63.9 52 48.1
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-08 63.9 52 48.1
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.3e-08 63.9 50 52.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.7e-08 63.5 86 39.5
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-08 63.5 49 49.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-08 63.2 52 48.1
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 2.2e-08 63.2 52 48.1
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 2.9e-08 62.8 51 43.1
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-08 62.4 88 34.1
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.7e-08 62.4 87 34.5
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 4.9e-08 62.0 89 31.5
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 4.9e-08 62.0 93 34.4
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-08 62.0 58 43.1
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 6.4e-08 61.6 90 33.3
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 6.4e-08 61.6 90 33.3
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.4e-08 61.6 60 41.7
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.4e-08 61.6 50 40.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 8.3e-08 61.2 90 33.3
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.3e-08 61.2 49 42.9
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-07 60.8 90 33.3
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.1e-07 60.8 76 40.8
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-07 60.5 41 56.1
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-07 59.3 52 42.3
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-07 58.5 88 35.2
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 7.1e-07 58.2 44 50.0
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-07 58.2 88 35.2
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 9.2e-07 57.8 54 42.6
Mapoly0117s0050 Marchantia polymorpha HOM05D001575 ORTHO05D001536 2.7e-06 56.2 85 37.6
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 3.5e-06 55.8 91 35.2
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 6.0e-06 55.1 84 34.5
Nitab4.5_0005244g0100 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.0e-06 55.1 49 55.1


User provided reference genes

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