Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.6e-45 184.5 90 100.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-24 115.5 87 69.0
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.8e-20 102.4 61 77.0
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.9e-19 96.7 66 69.7
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-18 96.3 60 73.3
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.9e-18 95.1 67 67.2
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-15 86.3 55 70.9
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 1.3e-15 86.3 60 65.0
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.7e-15 85.9 64 64.1
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.0e-15 85.1 55 70.9
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 3.9e-15 84.7 68 60.3
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 5.1e-15 84.3 61 63.9
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 5.1e-15 84.3 61 63.9
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 5.1e-15 84.3 68 57.4
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 5.1e-15 84.3 61 63.9
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 6.6e-15 84.0 61 62.3
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 8.7e-15 83.6 61 62.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 8.7e-15 83.6 61 63.9
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 8.7e-15 83.6 60 60.0
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 8.7e-15 83.6 61 63.9
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.5e-14 82.8 61 62.3
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 1.5e-14 82.8 61 62.3
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.5e-14 82.8 68 57.4
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.9e-14 82.4 77 55.8
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 1.9e-14 82.4 60 61.7
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 2.5e-14 82.0 61 59.0
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.5e-14 82.0 61 60.7
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 2.5e-14 82.0 81 51.9
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 2.5e-14 82.0 61 62.3
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 3.3e-14 81.6 74 52.7
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 3.3e-14 81.6 61 60.7
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 3.3e-14 81.6 60 61.7
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 4.3e-14 81.3 60 60.0
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.3e-14 81.3 61 62.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 4.3e-14 81.3 61 59.0
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 4.3e-14 81.3 60 60.0
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 5.6e-14 80.9 61 60.7
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 5.6e-14 80.9 61 60.7
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 5.6e-14 80.9 60 61.7
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.3e-14 80.5 61 59.0
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 9.6e-14 80.1 61 60.7
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 9.6e-14 80.1 68 55.9
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 9.6e-14 80.1 61 62.3
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.2e-13 79.7 68 54.4
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.2e-13 79.7 60 58.3
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.6e-13 79.3 60 60.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.6e-13 79.3 61 60.7
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.6e-13 79.3 60 58.3
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.6e-13 79.3 60 58.3
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.6e-13 79.3 73 53.4
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.6e-13 79.3 61 59.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 1.6e-13 79.3 61 59.0
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 2.1e-13 79.0 61 59.0
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.1e-13 79.0 60 58.3
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 2.1e-13 79.0 61 59.0
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 2.1e-13 79.0 59 61.0
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 2.8e-13 78.6 61 60.7
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 2.8e-13 78.6 59 59.3
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 2.8e-13 78.6 61 57.4
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 4.7e-13 77.8 60 58.3
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 6.2e-13 77.4 60 56.7
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.1e-13 77.0 60 58.3
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 8.1e-13 77.0 58 58.6
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 1.4e-12 76.3 61 57.4
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.4e-12 76.3 61 57.4
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.4e-12 76.3 61 57.4
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.4e-12 76.3 64 54.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.4e-12 75.5 61 62.3
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-12 75.1 61 55.7
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.1e-12 75.1 60 55.0
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 4.0e-12 74.7 61 55.7
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.3e-12 74.3 64 53.1
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 6.9e-12 73.9 60 53.3
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.2e-11 73.2 61 54.1
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-11 72.8 64 50.0
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 2.0e-11 72.4 61 57.4
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.0e-11 72.4 73 46.6
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.0e-11 72.4 73 46.6
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.0e-11 72.4 73 46.6
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 2.0e-11 72.4 73 46.6
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 2.0e-11 72.4 73 46.6
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.6e-11 72.0 56 58.9
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 2.6e-11 72.0 61 52.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 2.6e-11 72.0 64 48.4
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 3.4e-11 71.6 61 52.5
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 3.4e-11 71.6 62 56.5
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.6e-11 70.5 61 50.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.3e-10 69.7 61 50.8
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.3e-10 69.7 61 49.2
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.7e-10 69.3 61 54.1
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 2.2e-10 68.9 61 49.2
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 3.8e-10 68.2 61 52.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 8.4e-10 67.0 61 54.1
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 8.4e-10 67.0 61 47.5
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.4e-10 67.0 56 55.4
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.4e-10 67.0 62 54.8
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.4e-09 65.5 52 57.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 3.2e-09 65.1 61 49.2
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 4.2e-09 64.7 60 50.0
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 4.2e-09 64.7 62 53.2
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 5.4e-09 64.3 61 49.2
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 5.4e-09 64.3 63 47.6
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 7.1e-09 63.9 63 42.9
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.6e-08 62.8 64 40.6
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.6e-08 62.8 64 40.6
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.0e-07 60.1 62 43.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.3e-07 59.7 48 58.3
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.3e-07 59.7 48 58.3
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.7e-07 59.3 60 45.0
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 6.6e-07 57.4 62 45.2
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.5e-06 56.2 60 46.7
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.5e-06 55.5 54 50.0
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 4.3e-06 54.7 60 41.7


User provided reference genes

Program Settings