Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 8.9e-72 273.5 136 100.0
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 4.9e-70 267.7 136 97.1
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 7.1e-69 263.8 136 96.3
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.1e-68 262.3 136 95.6
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 2.1e-68 262.3 136 95.6
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 2.1e-68 262.3 136 95.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.7e-68 261.9 136 94.9
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 94.1
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 94.9
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.0e-67 260.0 136 94.1
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 94.1
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 93.4
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 93.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 3.9e-67 258.1 136 91.9
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 92.6
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 91.9
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 91.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 92.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.5e-66 256.1 136 91.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 92.6
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 91.9
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 3.3e-66 255.0 136 91.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.2
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.2
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.2
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.2
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 5.6e-66 254.2 136 91.2
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 7.3e-66 253.8 136 91.9
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 9.5e-66 253.4 136 90.4
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 91.2
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 91.2
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 91.2
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 89.0
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 89.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 91.9
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 89.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 90.4
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 91.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 89.7
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 89.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 6.2e-65 250.8 136 91.2
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 6.2e-65 250.8 136 86.8
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 6.2e-65 250.8 137 92.0
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 89.0
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-64 249.6 138 90.6
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 89.0
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.0e-64 248.1 138 89.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 4.0e-64 248.1 138 89.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 89.0
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 8.9e-64 246.9 137 90.5
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 86.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 3.4e-63 245.0 136 87.5
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 7.6e-63 243.8 136 86.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 87.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 87.5
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.8e-62 241.5 159 79.2
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 6.4e-62 240.7 137 84.7
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 8.4e-62 240.4 149 81.2
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.9e-61 239.2 137 86.1
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 7.1e-61 237.3 136 82.4
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 9.2e-61 236.9 148 80.4
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.5e-60 235.0 136 86.8
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 7.8e-60 233.8 172 70.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.3e-59 233.0 136 86.0
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.7e-59 232.6 153 77.8
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 5.6e-58 227.6 169 71.6
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 5.6e-58 227.6 136 77.2
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 7.3e-58 227.3 136 84.6
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.2e-57 226.5 136 75.7
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.6e-57 226.1 189 66.1
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.6e-57 226.1 136 75.7
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.1e-56 223.4 139 79.9
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.6e-52 209.5 120 88.3
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 3.9e-51 204.9 136 76.5
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.3e-50 201.4 124 82.3
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.3e-50 201.4 106 92.5
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.8e-49 198.0 110 84.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.4e-48 195.7 105 90.5
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.2e-47 193.4 136 75.7
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 5.8e-47 191.0 105 88.6
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.3e-46 189.9 136 75.0
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 8.4e-46 187.2 169 62.7
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.2e-45 184.9 136 73.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.6e-44 181.4 107 84.1
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 6.7e-43 177.6 138 69.6
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 4.8e-41 171.4 156 60.9
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 8.1e-41 170.6 136 66.9
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 4.5e-39 164.9 136 64.0
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 6.4e-38 161.0 136 64.0
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 8.4e-38 160.6 142 50.7
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.6e-36 156.4 80 92.5
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 6.0e-36 154.5 80 92.5
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 5.6e-34 147.9 77 96.1
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 94.8
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 9.6e-34 147.1 81 91.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 94.8
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 3.7e-33 145.2 82 85.4
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 3.7e-33 145.2 82 85.4
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 3.7e-33 145.2 82 86.6
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 92.2
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 92.2
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 93.5
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 93.5
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 6.2e-33 144.4 82 86.6
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 8.2e-33 144.1 86 83.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.1e-32 143.7 77 90.9
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.4e-32 143.3 77 90.9
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.4e-32 143.3 77 90.9
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.8e-32 142.9 77 90.9
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.8e-32 142.9 77 90.9
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.8e-32 142.9 77 90.9
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 87.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 87.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 87.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.8e-32 142.9 82 86.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.4e-32 142.5 136 50.0
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.0e-32 141.7 77 89.6
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.0e-32 141.7 77 89.6
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 6.9e-32 141.0 77 88.3
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 6.9e-32 141.0 128 49.2
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 6.9e-32 141.0 77 89.6
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 88.3
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 88.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 85.7
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 88.3
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 87.0
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 3.4e-31 138.7 77 87.0
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 4.5e-31 138.3 76 88.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 5.8e-31 137.9 81 82.7
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 5.8e-31 137.9 156 47.4
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 4.9e-30 134.8 87 75.9
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.9e-30 134.8 77 85.7
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 4.2e-29 131.7 75 86.7
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.3e-27 126.7 126 55.6
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.3e-27 125.9 60 100.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 8.7e-27 124.0 74 79.7
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.5e-26 123.2 116 61.2
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.4e-26 120.9 60 93.3
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 2.4e-24 115.9 56 98.2
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 9.0e-24 114.0 56 96.4
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 9.0e-24 114.0 56 96.4
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.0e-23 112.8 56 94.6
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 2.6e-23 112.5 56 94.6
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 2.6e-23 112.5 56 94.6
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 7.6e-23 110.9 56 91.1
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 6.5e-22 107.8 56 91.1
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 6.5e-22 107.8 110 55.5
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 5.5e-21 104.8 57 89.5
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 7.2e-21 104.4 75 60.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 9.4e-21 104.0 56 91.1
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.8e-19 99.8 56 83.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.1e-18 97.1 50 92.0
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.9e-14 82.4 44 84.1
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.9e-13 79.7 45 82.2
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 1.3e-09 67.0 109 34.9
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.8e-08 63.2 41 75.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.5e-07 58.5 135 25.9
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 4.5e-07 58.5 138 26.1
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.0e-06 57.4 138 28.3
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-06 57.0 29 93.1
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.2e-06 56.2 25 96.0


User provided reference genes

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