Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 0.0e+00 1543.1 912 100.0
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 3.4e-252 875.5 933 55.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 1.4e-245 853.6 939 55.2
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.5e-244 850.1 925 53.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.6e-244 849.4 924 55.0
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 4.4e-239 832.0 912 54.4
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 7.0e-237 824.7 927 53.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.3e-235 820.5 925 52.1
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 8.5e-235 817.8 932 53.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-234 817.4 788 59.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 9.4e-234 814.3 948 51.7
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.6e-231 806.2 902 53.9
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 4.8e-230 802.0 940 52.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.3e-230 801.6 800 56.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.0e-228 796.6 927 51.1
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 8.5e-227 791.2 957 52.4
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.7e-225 785.4 822 56.4
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.5e-223 780.4 923 51.8
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.1e-221 774.2 958 50.9
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 3.5e-220 769.2 815 56.0
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 4.2e-218 762.3 989 48.7
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.7e-217 759.6 949 49.2
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 8.8e-216 754.6 934 52.4
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.6e-215 753.1 961 48.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 7.5e-215 751.5 932 50.8
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 9.8e-215 751.1 925 51.6
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.9e-214 748.8 799 55.9
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.0e-213 745.0 924 50.9
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.9e-212 741.9 928 50.0
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.3e-211 740.0 923 49.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.3e-211 740.0 999 47.4
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.9e-211 739.6 926 50.8
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 3.8e-211 739.2 948 49.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 5.0e-211 738.8 976 49.3
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 6.6e-211 738.4 948 49.3
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.6e-211 738.0 924 49.5
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.1e-210 737.6 791 54.2
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.6e-210 735.3 995 47.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-208 730.7 993 46.5
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-208 730.7 994 47.0
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.8e-208 730.3 797 55.5
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.0e-208 729.2 806 54.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.5e-207 727.2 996 46.8
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.6e-207 726.5 793 53.6
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.4e-207 726.1 956 52.7
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 7.5e-207 724.9 946 48.5
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.3e-206 724.2 925 48.5
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.2e-206 723.4 793 55.4
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.9e-206 722.2 995 46.6
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.1e-205 721.1 728 56.7
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.4e-205 720.7 789 56.1
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 3.9e-203 712.6 789 53.0
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.1e-202 711.1 783 53.5
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.5e-202 710.7 791 53.7
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.1e-201 706.8 784 52.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.7e-201 705.7 813 50.7
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 8.0e-201 704.9 1097 43.9
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 8.0e-201 704.9 965 46.9
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.0e-200 704.5 934 48.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.3e-200 703.4 786 51.7
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 5.8e-199 698.7 799 53.1
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 7.5e-199 698.4 882 50.2
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-197 694.1 944 46.3
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 2.4e-197 693.3 808 53.3
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.0e-195 688.0 901 49.9
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.7e-195 687.2 789 52.5
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.9e-195 686.0 936 47.8
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.6e-194 682.2 939 46.2
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 5.6e-194 682.2 988 45.9
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.3e-192 676.8 781 52.5
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 5.2e-192 675.6 878 49.2
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.2e-191 674.5 926 46.1
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 4.4e-191 672.5 789 51.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.3e-190 671.0 926 46.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.9e-190 669.8 1042 43.8
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-187 661.0 793 51.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.7e-187 660.6 808 51.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 3.0e-187 659.8 927 46.4
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 8.6e-187 658.3 803 48.9
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.5e-186 657.5 928 47.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 9.5e-186 654.8 1013 42.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.6e-185 654.1 803 49.2
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 3.6e-185 652.9 804 49.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 8.1e-185 651.7 908 46.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.1e-184 649.8 799 51.2
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.0e-184 649.4 927 44.6
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 4.0e-184 649.4 788 48.9
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 6.8e-184 648.7 813 49.0
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.5e-183 647.5 895 45.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 2.6e-183 646.7 993 43.9
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 1.3e-182 644.4 923 47.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.9e-182 643.3 803 48.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 2.9e-182 643.3 832 47.7
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 6.4e-182 642.1 804 51.4
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.9e-181 640.6 836 47.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 3.2e-181 639.8 778 50.4
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.1e-180 637.1 926 46.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.1e-180 637.1 828 49.6
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.7e-179 634.0 795 48.7
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.7e-179 634.0 795 48.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.9e-178 630.6 805 48.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.3e-178 629.8 800 50.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.1e-177 627.1 806 48.6
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.8e-177 626.7 802 48.0
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.8e-177 626.7 816 48.9
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.6e-177 626.3 806 47.8
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 6.2e-177 625.5 777 47.7
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.4e-176 623.6 830 47.3
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.2e-175 621.3 865 45.5
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 2.9e-174 616.7 899 45.8
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.2e-173 612.8 800 47.4
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-172 610.9 827 46.4
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-172 610.9 827 46.4
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.1e-172 610.5 811 47.0
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-172 610.1 861 45.5
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 8.7e-171 605.1 676 52.1
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.6e-169 600.9 783 47.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.0e-167 594.0 802 45.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.2e-164 584.7 821 46.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-164 584.3 802 43.8
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.9e-163 579.7 788 46.7
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.1e-162 578.2 769 47.7
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 7.6e-151 538.9 807 41.9
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.5e-148 530.0 825 44.1
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.8e-147 527.7 811 43.8
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 5.0e-142 509.6 929 40.7
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 8.2e-137 492.3 930 39.6
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.5e-130 471.5 765 41.7
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 6.9e-128 462.6 781 41.7
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 8.8e-115 419.1 797 36.3
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 8.8e-115 419.1 797 36.3
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 5.5e-109 399.8 880 35.2
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.2e-102 377.9 536 46.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.5e-101 374.4 667 38.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.6e-100 370.5 803 35.2
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.8e-99 368.2 345 60.6
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 2.4e-96 357.8 378 53.2
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.5e-85 321.2 285 60.4
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.5e-77 294.7 340 54.7
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.1e-69 269.2 952 27.4
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 4.4e-66 257.3 367 46.9
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.1e-64 252.7 264 56.4
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.1e-62 243.8 380 44.5
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 4.4e-58 230.7 355 40.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-51 209.5 258 45.0
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 7.9e-47 193.4 137 75.2
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 8.4e-41 173.3 475 33.3
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.1e-35 154.8 99 76.8
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.6e-34 151.8 141 60.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.1e-31 142.1 230 39.1
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.9e-30 137.9 193 47.2
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.1e-29 136.3 102 67.6
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.2e-28 132.1 150 46.0
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 4.5e-26 124.4 111 59.5
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.3e-25 122.9 174 46.6
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 6.5e-25 120.6 88 69.3
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 3.3e-21 108.2 81 67.9
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 4.8e-20 104.4 67 77.6
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.4e-19 102.8 69 78.3
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 5.3e-19 100.9 89 53.9
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.5e-18 99.4 112 47.3
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 2.0e-18 99.0 72 68.1
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 4.5e-18 97.8 59 83.1
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-17 95.9 71 67.6
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.2e-17 95.5 89 51.7
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 5.0e-17 94.4 85 60.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.7e-15 87.8 59 79.7
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 6.7e-14 84.0 59 67.8
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.7e-12 78.2 72 52.8
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 4.8e-12 77.8 73 57.5
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 4.1e-11 74.7 83 49.4
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 6.9e-11 73.9 161 39.1
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 6.9e-11 73.9 73 50.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 9.1e-11 73.6 94 45.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.6e-10 72.0 45 82.2
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.5e-10 71.2 49 71.4
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 5.9e-10 70.9 126 34.9
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.0e-09 70.1 66 53.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 5.5e-08 64.3 62 54.8
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 2.1e-07 62.4 60 45.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.7e-07 62.0 63 44.4


User provided reference genes

Program Settings