Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03338 Eucalyptus grandis HOM05D002986 ORTHO05D007611 4.6e-38 161.8 164 100.0
Eucgr.E03142 Eucalyptus grandis HOM05D002986 ORTHO05D007611 2.4e-15 86.3 51 82.4
Eucgr.E03336 Eucalyptus grandis HOM05D002986 ORTHO05D007611 2.4e-15 86.3 51 82.4
Eucgr.E03343 Eucalyptus grandis HOM05D002986 ORTHO05D007611 9.2e-15 84.3 51 82.4
FAN17G1471 Fragaria x ananassa HOM05D002986 ORTHO05D007611 7.8e-14 81.3 150 83.3
Eucgr.E03340 Eucalyptus grandis HOM05D002986 ORTHO05D007611 5.6e-12 75.1 47 78.7
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.4e-10 70.5 45 80.0
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.5e-09 67.0 51 60.8
FAN22G0034 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.6e-09 66.2 51 60.8
Prupe.4G052800 Prunus persica HOM05D002986 ORTHO05D007611 4.4e-09 65.5 51 62.7
Cfa000530 Carpinus fangiana HOM05D002986 ORTHO05D007611 5.8e-09 65.1 51 60.8
Haze_06370 Corylus avellana HOM05D002986 ORTHO05D007611 5.8e-09 65.1 51 60.8
RcHm_v2.0_Chr5g0009291 Rosa chinensis HOM05D002986 ORTHO05D007611 5.8e-09 65.1 51 58.8
FvH4_4g07830 Fragaria vesca HOM05D002986 ORTHO05D007611 7.6e-09 64.7 51 60.8
FAN12G1172 Fragaria x ananassa HOM05D002986 ORTHO05D007611 7.6e-09 64.7 51 60.8
TWI63G1258 Tripterygium wilfordii HOM05D002986 ORTHO05D007611 7.6e-09 64.7 50 62.0
FvH4_3g08550 Fragaria vesca HOM05D002986 ORTHO05D007611 2.2e-08 63.2 51 58.8
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.2e-08 63.2 51 58.8
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 2.2e-08 63.2 51 56.9
Actinidia05655 Actinidia chinensis HOM05D002986 ORTHO05D007611 2.9e-08 62.8 51 56.9
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.9e-08 62.8 51 58.8
QL07p003708 Quercus lobata HOM05D002986 ORTHO05D007611 2.9e-08 62.8 49 59.2
Aqoxy1G00388 Aquilegia oxysepala HOM05D002986 ORTHO05D007611 3.8e-08 62.4 51 52.9
Rhsim13G0180300 Rhododendron simsii HOM05D002986 ORTHO05D007611 3.8e-08 62.4 51 60.8
Nn1g06408 Nelumbo nucifera HOM05D002986 ORTHO05D007611 4.9e-08 62.0 51 54.9
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 4.9e-08 62.0 51 52.9
COL.COLO4_31418 Corchorus olitorius HOM05D002986 ORTHO05D007611 6.4e-08 61.6 49 61.2
GSVIVG01011280001 Vitis vinifera HOM05D002986 ORTHO05D007611 8.4e-08 61.2 51 60.8
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 1.1e-07 60.8 51 54.9
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 1.1e-07 60.8 51 56.9
Lj7A254T21 Lonicera japonica HOM05D002986 ORTHO05D007611 1.1e-07 60.8 51 56.9
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 1.4e-07 60.5 51 49.0
vmacro03903 Vaccinium macrocarpon HOM05D002986 ORTHO05D007611 1.4e-07 60.5 51 56.9
MSTRG.7361 Avicennia marina HOM05D002986 ORTHO05D007611 2.4e-07 59.7 51 54.9
CSS0040504 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 2.4e-07 59.7 51 56.9
CSS0042999 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 2.4e-07 59.7 51 56.9
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 2.4e-07 59.7 51 56.9
Manes.17G049500 Manihot esculenta HOM05D002986 ORTHO05D007611 2.4e-07 59.7 51 54.9
Peaxi162Scf00099g00032 Petunia axillaris HOM05D002986 ORTHO05D007611 3.2e-07 59.3 51 56.9
SGA_v2.0_scaffold22G09659 Striga asiatica HOM05D002986 ORTHO05D007611 4.2e-07 58.9 51 52.9
FAN25G0667 Fragaria x ananassa HOM05D002986 ORTHO05D007611 5.4e-07 58.5 47 59.6
PGSC0003DMG401031751 Solanum tuberosum HOM05D002986 ORTHO05D007611 7.1e-07 58.2 51 56.9
TAR624G0606 Trochodendron aralioides HOM05D002986 ORTHO05D007611 7.1e-07 58.2 51 51.0
TAR624G1385 Trochodendron aralioides HOM05D002986 ORTHO05D007611 7.1e-07 58.2 51 51.0
Dinv40602 Davidia involucrata HOM05D002986 ORTHO05D007611 1.2e-06 57.4 51 56.9
Atru.chr10.1787 Acer truncatum HOM05D002986 ORTHO05D007611 1.6e-06 57.0 51 56.9
Gohir.D05G161466 Gossypium hirsutum HOM05D002986 ORTHO05D007611 1.6e-06 57.0 51 52.9
Gorai.009G166600 Gossypium raimondii HOM05D002986 ORTHO05D007611 1.6e-06 57.0 51 52.9
Nitab4.5_0001955g0120 Nicotiana tabacum HOM05D002986 ORTHO05D007611 2.1e-06 56.6 51 54.9
QL05p042043 Quercus lobata HOM05D002986 ORTHO05D007611 2.1e-06 56.6 50 52.0
Solyc02g077650.2 Solanum lycopersicum HOM05D002986 ORTHO05D007611 2.1e-06 56.6 51 54.9
Sopen02g022550 Solanum pennellii HOM05D002986 ORTHO05D007611 2.1e-06 56.6 51 54.9
MELO3C035724.2 Cucumis melo HOM05D002986 ORTHO05D007611 2.7e-06 56.2 51 51.0
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 2.7e-06 56.2 50 56.0
PGR083G2565 Punica granatum HOM05D002986 ORTHO05D007611 2.7e-06 56.2 51 52.9
VMungo0331G1630 Vigna mungo HOM05D002986 ORTHO05D007611 2.7e-06 56.2 51 54.9
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 3.5e-06 55.8 51 49.0
Nitab4.5_0017998g0010 Nicotiana tabacum HOM05D002986 ORTHO05D007611 3.5e-06 55.8 51 54.9
Thecc.06G180800 Theobroma cacao HOM05D002986 ORTHO05D007611 3.5e-06 55.8 50 54.0
Gohir.A05G158800 Gossypium hirsutum HOM05D002986 ORTHO05D007611 4.6e-06 55.5 51 52.9
Phvul.010G102600 Phaseolus vulgaris HOM05D002986 ORTHO05D007611 4.6e-06 55.5 51 52.9
TPR.G11746 Trifolium pratense HOM05D002986 ORTHO05D007611 4.6e-06 55.5 51 51.0
TAR626G0685 Trochodendron aralioides HOM05D002986 ORTHO05D007611 4.6e-06 55.5 51 51.0
HPP92_009975 Vanilla planifolia HOM05D002986 ORTHO05D007611 6.0e-06 55.1 51 45.1
DCAR_007997 Daucus carota HOM05D002986 ORTHO05D007611 7.8e-06 54.7 51 56.9


User provided reference genes

Program Settings