Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 0.0e+00 1285.4 681 100.0
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-260 903.3 637 69.4
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 3.3e-260 901.7 637 69.2
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.7e-260 901.0 637 68.9
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.4e-258 896.3 633 70.9
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 8.5e-256 887.1 639 68.4
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.5e-255 886.3 639 68.9
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 4.2e-255 884.8 634 68.6
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 2.1e-254 882.5 637 68.0
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 2.7e-254 882.1 634 67.8
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.6e-254 881.7 639 68.4
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 4.7e-254 881.3 634 67.2
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 6.1e-254 880.9 635 67.9
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 5.7e-252 874.4 636 66.8
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.4e-250 869.8 637 67.8
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.7e-249 865.5 634 66.1
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 5.9e-249 864.4 634 65.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.7e-248 862.8 635 67.6
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.5e-247 859.8 634 66.7
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 8.0e-246 854.0 637 67.0
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.5e-244 849.7 638 66.0
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.5e-244 849.7 633 65.6
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.6e-244 849.0 633 65.6
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.8e-243 845.5 633 65.4
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.1e-242 841.6 636 65.3
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 4.1e-242 841.6 636 65.1
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.0e-242 840.9 633 65.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.0e-241 839.3 634 64.8
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 2.7e-241 839.0 636 65.1
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 7.7e-241 837.4 634 65.3
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 6.6e-240 834.3 641 65.1
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 8.6e-240 833.9 638 65.2
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 1.9e-239 832.8 640 65.6
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 7.2e-239 830.9 640 64.2
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.2e-238 830.1 644 64.0
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 4.7e-238 828.2 636 65.1
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.4e-237 826.6 600 66.7
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.0e-237 825.1 657 62.6
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 1.5e-236 823.2 638 64.6
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.5e-236 823.2 636 64.2
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 2.0e-236 822.8 643 63.9
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 4.4e-236 821.6 635 64.4
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 5.7e-236 821.2 646 64.9
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 5.7e-236 821.2 641 64.1
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.3e-235 820.1 639 64.6
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 2.9e-235 818.9 634 64.4
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.4e-234 816.6 636 63.7
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.8e-234 816.2 635 65.4
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 3.2e-234 815.5 648 64.4
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 4.6e-233 811.6 642 63.2
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 4.3e-231 805.1 641 63.0
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 9.5e-231 803.9 637 62.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 9.5e-231 803.9 635 63.9
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.2e-230 803.5 637 63.0
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.1e-230 802.7 636 64.6
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 8.0e-230 800.8 634 63.9
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 8.0e-230 800.8 637 64.5
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.8e-229 799.7 637 63.4
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.8e-229 799.7 564 68.3
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 4.0e-229 798.5 663 61.4
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 5.2e-229 798.1 636 61.8
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 3.7e-227 792.0 638 62.7
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 6.4e-227 791.2 643 63.3
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 8.3e-227 790.8 637 62.3
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.4e-226 789.3 637 61.9
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 2.4e-226 789.3 633 63.7
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 4.1e-226 788.5 635 62.5
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 5.4e-226 788.1 633 63.5
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.6e-225 786.6 633 63.2
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 3.5e-225 785.4 636 62.1
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 4.6e-225 785.0 635 62.0
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.9e-224 781.9 639 61.7
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.1e-223 780.4 635 61.9
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.5e-223 780.0 636 62.4
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 2.5e-223 779.2 639 61.0
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 7.3e-223 777.7 636 62.7
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 9.5e-223 777.3 635 62.7
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 1.2e-222 776.9 580 66.0
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 2.8e-222 775.8 634 63.2
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.8e-221 773.1 632 61.9
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 8.9e-221 770.8 639 61.0
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.2e-220 770.4 638 61.4
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 2.0e-220 769.6 641 60.7
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 3.4e-220 768.8 636 60.7
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.3e-219 766.9 639 60.7
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 9.2e-218 760.8 584 65.1
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.1e-217 759.6 638 60.5
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 7.8e-217 757.7 639 60.7
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 5.1e-216 755.0 639 60.6
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 9.5e-215 750.7 579 63.7
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 4.0e-213 745.3 637 60.1
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 7.1e-210 734.6 578 63.7
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.7e-208 729.9 634 59.3
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 3.9e-208 728.8 637 60.4
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 8.6e-208 727.6 597 61.0
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.6e-206 723.4 674 55.9
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 5.8e-204 714.9 635 57.5
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.7e-203 713.4 619 57.0
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.7e-195 686.8 606 57.3
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.4e-194 682.9 539 62.3
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 2.4e-186 656.4 550 59.3
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.9e-171 606.3 567 56.1
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.2e-164 584.3 467 60.2
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 5.7e-159 565.5 504 57.7
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.8e-157 560.5 668 47.2
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.7e-151 538.9 571 49.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.5e-146 524.2 558 51.3
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 9.1e-141 505.0 430 57.9
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 5.0e-131 472.6 627 42.9
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.0e-128 463.0 459 53.4
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.7e-124 450.3 392 63.3
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 5.2e-120 436.0 829 34.5
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 4.9e-118 429.5 634 41.2
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 2.6e-111 407.1 393 52.9
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.5e-106 391.3 565 41.1
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.2e-88 329.7 191 78.5
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.4e-80 305.1 279 55.6
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.2e-76 292.0 323 49.5
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 2.9e-70 270.8 631 33.0
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 6.0e-68 263.1 222 60.4
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 6.9e-64 249.6 226 53.1
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.5e-63 248.4 301 44.5
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.3e-59 234.6 642 30.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.3e-57 228.8 649 29.6
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 3.1e-56 224.2 403 39.2
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.7e-54 218.4 712 27.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.9e-46 191.0 145 71.7
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 3.8e-46 190.7 172 61.6
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.8e-43 179.5 274 42.7
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.6e-42 177.9 274 42.3
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 3.8e-38 164.1 145 53.8
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 5.0e-38 163.7 121 64.5
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 6.1e-36 156.8 170 51.2
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 8.8e-35 152.9 140 57.9
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.0e-34 151.8 268 38.4
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.0e-30 139.4 85 70.6
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.7e-30 138.7 183 37.7
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 6.5e-30 136.7 107 68.2
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.7e-26 122.9 233 37.3
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-25 121.3 233 36.9
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.8e-25 121.3 233 36.9
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-25 121.3 233 36.9
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-25 121.3 233 36.9
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.3e-22 112.5 186 38.7
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.5e-21 107.1 183 39.3
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 9.4e-21 106.3 183 39.3
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.2e-20 105.9 183 38.8
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 6.1e-20 103.6 206 35.0
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.0e-20 103.2 163 41.7
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 3.7e-17 94.4 58 82.8
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 3.1e-16 91.3 58 81.0
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.7e-09 67.8 50 60.0
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.8e-08 65.5 40 67.5
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 4.1e-08 64.3 44 63.6
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 1.2e-07 62.8 46 58.7


User provided reference genes

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