Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03230 Eucalyptus grandis HOM05D000002 ORTHO05D000047 3.5e-45 184.5 87 100.0
Eucgr.C01993 Eucalyptus grandis HOM05D000002 ORTHO05D000047 7.5e-32 140.2 86 77.9
HPP92_021869 Vanilla planifolia HOM05D000002 ORTHO05D000047 1.3e-23 112.8 85 62.4
VMungo0720G1249 Vigna mungo HOM05D000002 ORTHO05D000047 5.4e-22 107.5 84 57.1
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 6.0e-21 104.0 85 56.5
Oeu046725.1 Olea europaea HOM05D000002 ORTHO05D000047 6.0e-21 104.0 84 57.1
Duzib187G0946 Durio zibethinus HOM05D000002 ORTHO05D000047 1.0e-20 103.2 85 56.5
Cpa.g.sc15.71 Carica papaya HOM05D000002 ORTHO05D000047 2.3e-20 102.1 82 58.5
Duzib151G0310 Durio zibethinus HOM05D000002 ORTHO05D000047 2.3e-20 102.1 85 55.3
Duzib063G0004 Durio zibethinus HOM05D000002 ORTHO05D000047 3.0e-20 101.7 85 55.3
CSS0039864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.6e-20 100.5 84 54.8
Oeu041660.4 Olea europaea HOM05D000002 ORTHO05D000047 3.3e-19 98.2 84 52.4
Duzib168G2283 Durio zibethinus HOM05D000002 ORTHO05D000047 7.3e-19 97.1 85 54.1
Oeu034110.1 Olea europaea HOM05D000002 ORTHO05D000047 2.8e-18 95.1 84 51.2
Oeu021652.1 Olea europaea HOM05D000002 ORTHO05D000047 3.6e-18 94.7 84 51.2
Oeu008211.1 Olea europaea HOM05D000002 ORTHO05D000047 1.1e-17 93.2 83 53.0
Cpa.g.sc20.211 Carica papaya HOM05D000002 ORTHO05D000047 3.1e-17 91.7 84 48.8
VMungo1383G3030 Vigna mungo HOM05D000002 ORTHO05D019586 3.1e-17 91.7 83 51.8
VMungo1215G3020 Vigna mungo HOM05D000002 ORTHO05D000001 1.5e-16 89.4 82 48.8
Cpa.g.sc487.6 Carica papaya HOM05D000002 ORTHO05D000047 2.6e-16 88.6 83 49.4
Potri.001G247404 Populus trichocarpa HOM05D000002 ORTHO05D000047 7.6e-16 87.0 86 46.5
SHI03919 Sapria himalayana HOM05D000002 ORTHO05D000047 1.7e-15 85.9 84 50.0
TAR332G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.2e-15 85.5 84 46.4
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 2.2e-15 85.5 82 46.3
Cpa.g.sc164.10 Carica papaya HOM05D000002 ORTHO05D000047 1.1e-14 83.2 73 49.3
Oeu025453.1 Olea europaea HOM05D000002 ORTHO05D000047 1.4e-14 82.8 85 43.5
CSS0022475 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 5.4e-14 80.9 68 52.9
Cpa.g.c39297 Carica papaya HOM05D000002 ORTHO05D000047 7.1e-14 80.5 85 47.1
TPR.G30202 Trifolium pratense HOM05D000002 ORTHO05D000001 1.6e-13 79.3 77 49.4
VMungo0251G1086 Vigna mungo HOM05D000336 ORTHO05D002705 3.5e-13 78.2 82 45.1
Manes.10G096950 Manihot esculenta HOM05D000002 ORTHO05D000047 2.3e-12 75.5 84 45.2
Hma1.2p1_0324F.1_g125750 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.5e-11 72.0 83 43.4
GSVIVG01017988001 Vitis vinifera HOM05D000002 ORTHO05D000047 3.3e-11 71.6 42 78.6
HPP92_005074 Vanilla planifolia HOM05D000002 ORTHO05D000047 5.6e-11 70.9 58 56.9
SHI24997 Sapria himalayana HOM05D000002 ORTHO05D000047 4.8e-10 67.8 65 49.2
HPP92_021418 Vanilla planifolia HOM05D000002 ORTHO05D000047 8.1e-10 67.0 57 56.1
HPP92_009345 Vanilla planifolia HOM05D000002 ORTHO05D000047 1.1e-09 66.6 60 51.7
HPP92_024459 Vanilla planifolia HOM05D000002 ORTHO05D000047 1.8e-09 65.9 57 54.4
HPP92_025431 Vanilla planifolia HOM05D000002 ORTHO05D000047 3.1e-09 65.1 57 54.4
Hma1.2p1_0053F.1_g030910 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.5e-08 62.8 73 42.5
GSVIVG01029816001 Vitis vinifera HOM05D000168 ORTHO05D000047 1.5e-08 62.8 77 37.7
Sopen12g014460 Solanum pennellii HOM05D000014 ORTHO05D000016 2.0e-08 62.4 58 50.0
HPP92_005717 Vanilla planifolia HOM05D000002 ORTHO05D000047 2.0e-08 62.4 41 70.7
AUR62008603 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.6e-08 62.0 85 32.9
Hma1.2p1_0158F.1_g069853 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.8e-08 60.8 89 39.3
AUR62012866 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.3e-07 59.7 85 31.8
Thecc.05G205900 Theobroma cacao HOM05D000002 ORTHO05D000047 1.3e-07 59.7 78 32.1
HPP92_022694 Vanilla planifolia HOM05D000002 ORTHO05D000047 1.3e-07 59.7 42 64.3
Atru.chr11.1318 Acer truncatum HOM05D004129 ORTHO05D005039 2.2e-07 58.9 54 48.1
arahy.Tifrunner.gnm1.ann1.5WF10W Arachis hypogaea HOM05D000002 ORTHO05D000047 2.2e-07 58.9 83 34.9
Hma1.2p1_0668F.1_g199811 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.2e-07 58.9 75 38.7
AUR62001170 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.9e-07 58.5 85 31.8
Hma1.2p1_0004F.1_g004100 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.9e-07 58.5 77 39.0
AUR62010632 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.8e-07 58.2 81 30.9
Hma1.2p1_0111F.1_g053730 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.8e-07 58.2 78 37.2
Hma1.2p1_0232F.1_g097650 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.8e-07 58.2 77 39.0
Hma1.2p1_0308F.1_g120101 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.8e-07 58.2 78 37.2
Cpa.g.sc110.37 Carica papaya HOM05D000002 ORTHO05D000047 4.9e-07 57.8 54 51.9
AUR62010580 Chenopodium quinoa HOM05D001123 ORTHO05D000001 6.4e-07 57.4 85 31.8
AUR62020412 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.4e-07 57.4 81 32.1
Hma1.2p1_0359F.1_g135490 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 6.4e-07 57.4 77 39.0
Sopen01g028070 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 57.4 84 31.0
Sopen03g021340 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 57.4 84 31.0
Sopen08g029110 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-07 57.4 84 31.0
Ah.05g172020 Amaranthus hybridus HOM05D000002 ORTHO05D000047 8.4e-07 57.0 84 29.8
Sopen09g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 8.4e-07 57.0 84 31.0
SHI25275 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-06 56.6 58 46.6
Atru.chr2.1876 Acer truncatum HOM05D000002 ORTHO05D000047 1.4e-06 56.2 79 38.0
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 55.8 75 33.3
Cpa.g.sc110.7 Carica papaya HOM05D000002 ORTHO05D000047 1.9e-06 55.8 77 36.4
AUR62005351 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.9e-06 55.8 81 32.1
AUR62030950 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.9e-06 55.8 81 30.9
Hma1.2p1_0812F.1_g222220 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.9e-06 55.8 77 36.4
Solyc04g054227.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen01g003530 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen01g006040 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen02g035510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen03g020100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen04g003470 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen04g014270 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Sopen12g034280 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-06 55.8 84 31.0
Atru.chr2.1700 Acer truncatum HOM05D000002 ORTHO05D000047 2.4e-06 55.5 78 38.5
Aqoxy7G01998 Aquilegia oxysepala HOM05D000002 ORTHO05D000047 2.4e-06 55.5 75 32.0
AUR62015954 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.4e-06 55.5 85 30.6
Sopen09g026670 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-06 55.5 84 31.0
AUR62032213 Chenopodium quinoa HOM05D001471 ORTHO05D000001 3.2e-06 55.1 81 30.9
Hma1.2p1_0901F.1_g234740 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.2e-06 55.1 78 35.9
arahy.Tifrunner.gnm1.ann1.3QE0TW Arachis hypogaea HOM05D000002 ORTHO05D000047 4.2e-06 54.7 62 35.5
CSS0012133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 4.2e-06 54.7 75 32.0
Hma1.2p1_0210F.1_g089480 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 4.2e-06 54.7 77 36.4
MBI06_g16700_MAGBIO Magnolia biondii HOM05D031959 ORTHO05D000047 4.2e-06 54.7 73 32.9
Ah.05g172990 Amaranthus hybridus HOM05D064429 ORTHO05D000047 5.4e-06 54.3 85 29.4
Ah.05g176970 Amaranthus hybridus HOM05D000002 ORTHO05D000047 5.4e-06 54.3 81 29.6
Gorai.008G098500 Gossypium raimondii HOM05D000002 ORTHO05D000047 5.4e-06 54.3 71 36.6
Sopen01g007340 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen01g027500 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen03g038760 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen04g006210 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen04g010900 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen04g012240 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen04g013780 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen04g031270 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen05g003950 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen05g006520 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen05g033640 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen06g012710 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen06g019260 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen06g024240 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen07g008080 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen07g032500 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen08g009250 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen08g014300 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen08g025510 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen09g013130 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen10g008540 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen11g022110 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Sopen11g023750 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 81 30.9
Hma1.2p1_1841F.1_g304990 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 7.1e-06 53.9 77 37.7
CSS0000940 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0004057 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0009499 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0013318 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0019500 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0020187 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0021109 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0021536 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0027844 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0034457 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0036738 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
CSS0045746 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.3e-06 53.5 75 32.0
AUR62035649 Chenopodium quinoa HOM05D000002 ORTHO05D000001 9.3e-06 53.5 80 31.2
Lj1g0008265 Lotus japonicus HOM05D000002 ORTHO05D000047 9.3e-06 53.5 78 33.3
Lj3g0020805 Lotus japonicus HOM05D000002 ORTHO05D000047 9.3e-06 53.5 78 33.3


User provided reference genes

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