Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02942 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.2e-42 176.0 86 100.0
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 6.5e-20 100.5 87 59.8
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.9e-19 99.0 87 58.6
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.7e-18 95.1 87 56.3
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 1.3e-12 76.3 85 48.2
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 1.7e-12 75.9 81 46.9
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 6.6e-12 73.9 85 49.4
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 2.5e-11 72.0 79 44.3
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.5e-11 72.0 87 46.0
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 4.2e-11 71.2 80 46.2
Eucgr.E02248 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.2e-11 71.2 79 51.9
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 5.5e-11 70.9 79 45.6
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 5.5e-11 70.9 75 48.0
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 5.5e-11 70.9 75 50.7
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 7.2e-11 70.5 73 47.9
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 7.2e-11 70.5 85 47.1
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 9.5e-11 70.1 75 48.0
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 1.2e-10 69.7 75 49.3
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 1.2e-10 69.7 78 48.7
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 1.6e-10 69.3 76 47.4
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 2.1e-10 68.9 75 48.0
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.8e-10 68.6 54 59.3
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 3.6e-10 68.2 78 44.9
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 3.6e-10 68.2 75 48.0
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 4.7e-10 67.8 70 48.6
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 6.1e-10 67.4 71 49.3
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 1.0e-09 66.6 75 48.0
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 1.0e-09 66.6 65 50.8
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 1.4e-09 66.2 54 55.6
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 1.4e-09 66.2 54 55.6
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 1.4e-09 66.2 54 55.6
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 1.8e-09 65.9 75 48.0
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 3.0e-09 65.1 81 43.2
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 3.0e-09 65.1 83 42.2
Eucgr.E02102 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.0e-09 64.7 47 66.0
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 4.0e-09 64.7 72 47.2
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 4.0e-09 64.7 72 47.2
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 4.0e-09 64.7 72 47.2
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 5.2e-09 64.3 61 49.2
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 6.8e-09 63.9 85 42.4
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 6.8e-09 63.9 46 60.9
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 8.9e-09 63.5 81 43.2
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 8.9e-09 63.5 59 47.5
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 8.9e-09 63.5 79 40.5
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 8.9e-09 63.5 75 46.7
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 8.9e-09 63.5 65 49.2
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 1.2e-08 63.2 54 51.9
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 1.2e-08 63.2 59 49.2
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 1.2e-08 63.2 65 44.6
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 1.5e-08 62.8 54 50.0
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 1.5e-08 62.8 65 49.2
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.5e-08 62.8 65 47.7
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 1.5e-08 62.8 54 51.9
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 2.0e-08 62.4 60 51.7
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 2.6e-08 62.0 67 43.3
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 3.4e-08 61.6 55 49.1
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 3.4e-08 61.6 75 41.3
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 3.4e-08 61.6 65 46.2
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.4e-08 61.6 51 52.9
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.4e-08 61.6 65 46.2
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 3.4e-08 61.6 54 50.0
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 3.4e-08 61.6 54 50.0
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 3.4e-08 61.6 60 51.7
SGA_v2.0_scaffold231G43408 Striga asiatica HOM05D003832 ORTHO05D004365 3.4e-08 61.6 54 51.9
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 4.4e-08 61.2 69 46.4
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 4.4e-08 61.2 59 42.4
Eucgr.E02291 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.4e-08 61.2 72 51.4
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 4.4e-08 61.2 79 41.8
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 4.4e-08 61.2 65 46.2
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 5.7e-08 60.8 65 47.7
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 5.7e-08 60.8 69 44.9
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 5.7e-08 60.8 56 48.2
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 7.5e-08 60.5 65 46.2
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 7.5e-08 60.5 65 46.2
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 7.5e-08 60.5 54 50.0
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 7.5e-08 60.5 59 47.5
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 7.5e-08 60.5 59 47.5
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 9.8e-08 60.1 59 47.5
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.3e-07 59.7 82 40.2
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 1.3e-07 59.7 59 44.1
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 1.3e-07 59.7 65 46.2
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 1.3e-07 59.7 49 55.1
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 1.7e-07 59.3 65 44.6
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 1.7e-07 59.3 51 52.9
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 1.7e-07 59.3 54 48.1
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 1.7e-07 59.3 54 48.1
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 2.2e-07 58.9 54 48.1
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 2.2e-07 58.9 51 52.9
CARHR290860 Cardamine hirsuta HOM05D003832 ORTHO05D004365 2.2e-07 58.9 39 64.1
Eucgr.E02142 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.2e-07 58.9 43 65.1
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 2.2e-07 58.9 51 52.9
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 2.8e-07 58.5 65 44.6
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 2.8e-07 58.5 65 46.2
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 2.8e-07 58.5 65 46.2
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 2.8e-07 58.5 65 46.2
CARHR037820 Cardamine hirsuta HOM05D003832 ORTHO05D004365 2.8e-07 58.5 51 51.0
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 2.8e-07 58.5 53 49.1
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 2.8e-07 58.5 54 48.1
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 2.8e-07 58.5 51 52.9
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 2.8e-07 58.5 65 47.7
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 2.8e-07 58.5 76 40.8
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 3.7e-07 58.2 68 44.1
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 3.7e-07 58.2 66 43.9
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 4.9e-07 57.8 51 51.0
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 4.9e-07 57.8 51 51.0
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 4.9e-07 57.8 51 51.0
Eucgr.E02240 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.9e-07 57.8 59 54.2
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 4.9e-07 57.8 74 40.5
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 6.3e-07 57.4 59 44.1
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 6.3e-07 57.4 61 44.3
Lsat_1_v5_gn_5_115440 Lactuca sativa HOM05D003832 ORTHO05D004365 6.3e-07 57.4 75 38.7
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 1.1e-06 56.6 46 54.3
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 1.4e-06 56.2 89 34.8
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 1.4e-06 56.2 49 49.0
Os03g0321900 Oryza sativa ssp. japonica HOM05D003832 ORTHO05D004365 1.8e-06 55.8 42 54.8
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 2.4e-06 55.5 55 47.3
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 3.1e-06 55.1 59 42.4
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 4.1e-06 54.7 46 52.2
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 5.4e-06 54.3 65 43.1
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 5.4e-06 54.3 59 42.4
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 7.0e-06 53.9 66 42.4


User provided reference genes

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