Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 2.2e-221 771.9 372 100.0
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 2.3e-218 761.9 372 98.4
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 5.8e-166 587.8 370 75.1
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 1.5e-161 573.2 375 71.7
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 6.9e-159 564.3 381 71.7
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 4.5e-158 561.6 373 71.3
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 6.5e-157 557.8 367 72.8
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 3.2e-156 555.4 377 70.3
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 2.1e-155 552.7 369 70.7
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 4.6e-155 551.6 377 70.0
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 2.5e-153 545.8 373 69.4
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 4.3e-153 545.0 372 67.7
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 5.7e-153 544.7 372 67.7
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 5.7e-153 544.7 372 71.2
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 7.4e-153 544.3 372 67.7
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 6.3e-152 541.2 372 69.9
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 6.3e-152 541.2 376 67.0
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 1.1e-151 540.4 379 70.4
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 2.6e-150 535.8 381 68.2
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 4.5e-150 535.0 377 69.2
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 5.9e-150 534.6 377 69.8
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.0e-149 533.9 381 68.0
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 2.2e-149 532.7 374 67.6
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 3.8e-149 531.9 377 68.4
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 3.8e-149 531.9 381 68.2
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.1e-148 530.4 382 68.1
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.1e-148 530.4 381 67.7
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 1.1e-148 530.4 377 67.1
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 7.2e-148 527.7 376 68.6
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 1.2e-147 526.9 373 67.8
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 1.4e-146 523.5 375 66.1
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 2.3e-146 522.7 396 64.4
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 3.9e-146 521.9 377 67.1
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 5.1e-146 521.5 375 65.6
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 1.7e-144 516.5 374 64.7
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 3.1e-143 512.3 376 67.3
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 9.1e-143 510.8 377 66.0
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 2.9e-141 505.8 368 65.2
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 5.0e-141 505.0 373 63.3
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 8.5e-141 504.2 370 63.5
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 7.2e-140 501.1 380 62.4
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 7.2e-140 501.1 372 63.2
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 2.7e-139 499.2 370 63.0
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 3.6e-139 498.8 370 63.0
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 4.4e-137 491.9 376 61.7
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 7.4e-137 491.1 375 63.7
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 7.4e-137 491.1 369 64.2
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 9.7e-137 490.7 377 62.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.3e-136 490.3 365 63.3
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.8e-136 489.2 381 64.0
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 4.8e-136 488.4 376 60.6
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 6.3e-136 488.0 376 60.9
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 8.2e-136 487.6 380 62.4
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 7.0e-135 484.6 377 62.6
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 7.0e-135 484.6 377 62.6
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.6e-134 483.4 368 62.8
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.6e-134 483.4 375 61.1
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 2.6e-134 482.6 376 63.0
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 3.5e-134 482.3 374 63.1
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 7.7e-134 481.1 365 62.7
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 2.9e-133 479.2 352 65.9
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 6.5e-133 478.0 383 61.1
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.5e-132 474.9 363 61.7
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.6e-131 473.4 356 62.9
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.8e-130 469.9 357 63.0
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 1.8e-130 469.9 377 60.5
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 3.0e-130 469.2 370 63.0
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 3.3e-129 465.7 380 61.1
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 5.7e-129 464.9 371 63.1
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 9.7e-129 464.2 395 57.7
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 6.3e-128 461.5 377 58.9
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 1.3e-125 453.8 371 60.1
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 5.5e-124 448.4 379 62.0
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 3.6e-123 445.7 375 58.4
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 7.5e-121 438.0 373 56.6
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 3.7e-120 435.6 374 61.5
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 6.3e-120 434.9 373 57.1
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 5.9e-118 428.3 370 57.3
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 2.9e-109 399.4 257 72.8
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 4.3e-100 369.0 380 49.7
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 5.4e-95 352.1 386 48.7
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 5.0e-93 345.5 313 55.3
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 1.8e-90 337.0 408 46.1
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 1.9e-87 327.0 291 55.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 5.1e-85 318.9 355 51.5
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 3.2e-79 299.7 187 72.7
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 3.5e-78 296.2 381 42.5
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 1.5e-73 280.8 370 41.9
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.7e-69 267.3 226 58.4
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 2.1e-67 260.4 206 60.7
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 2.4e-66 256.9 377 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 5.3e-66 255.8 322 42.5
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 3.2e-63 246.5 222 54.5
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 3.5e-62 243.0 211 56.9
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 5.6e-60 235.7 406 36.2
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 1.1e-58 231.5 148 69.6
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 1.4e-58 231.1 188 62.2
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-57 228.0 248 48.8
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.5e-57 227.6 189 61.9
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 1.1e-55 221.5 256 47.7
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 1.4e-50 204.5 209 53.1
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 1.4e-50 204.5 209 53.1
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 6.9e-50 202.2 190 54.7
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 6.7e-45 185.7 184 52.7
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 3.7e-43 179.9 125 64.0
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 4.1e-42 176.4 102 77.5
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 1.5e-41 174.5 143 60.1
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 7.6e-41 172.2 151 57.0
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 6.5e-40 169.1 151 62.3
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 5.5e-39 166.0 122 62.3
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 8.7e-37 158.7 267 37.8
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 3.3e-36 156.8 142 54.9
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 2.7e-30 137.1 172 45.9
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 2.0e-25 120.9 250 32.0
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 8.5e-24 115.5 103 48.5
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 3.9e-21 106.7 98 58.2
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.1e-20 105.1 78 65.4
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 4.1e-18 96.7 479 22.1
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 4.5e-17 93.2 75 56.0
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.9e-15 87.8 69 60.9
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 6.1e-14 82.8 160 39.4
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.4e-13 81.6 179 38.0
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 6.7e-13 79.3 102 52.0
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 1.1e-07 62.0 44 63.6
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 1.2e-06 58.5 105 41.9


User provided reference genes

Program Settings