Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 6.1e-242 840.5 453 100.0
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.0e-104 383.6 347 61.4
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 4.5e-104 382.5 473 53.9
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 2.3e-103 380.2 355 61.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.2e-101 374.4 462 52.6
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 5.2e-100 369.0 336 61.3
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.6e-99 366.7 464 49.6
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 2.6e-99 366.7 360 60.3
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 7.5e-99 365.2 467 49.9
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.2e-98 363.6 366 57.9
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.2e-98 363.6 463 49.0
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 3.1e-97 359.8 366 56.6
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 4.1e-97 359.4 472 48.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.6e-96 357.5 351 59.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 5.9e-96 355.5 463 51.8
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 5.9e-96 355.5 460 51.3
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.0e-95 354.8 356 57.3
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 1.1e-94 351.3 493 47.1
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 5.6e-94 349.0 463 48.4
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 7.3e-94 348.6 466 51.1
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.6e-93 347.4 375 54.9
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 4.7e-93 345.9 380 54.5
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 4.7e-93 345.9 461 50.5
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 8.0e-93 345.1 458 49.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.4e-92 344.4 461 48.8
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 5.2e-92 342.4 465 51.4
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.2e-91 341.3 357 57.4
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.5e-91 338.6 399 52.4
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 7.5e-91 338.6 341 56.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 9.8e-91 338.2 437 47.8
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.9e-90 336.7 323 59.4
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.1e-89 334.7 458 50.0
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.2e-89 331.6 458 48.7
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.6e-88 330.9 283 62.5
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-88 329.3 463 49.0
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 4.3e-86 322.8 442 48.6
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.8e-85 320.1 350 53.1
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 8.0e-85 318.5 426 50.0
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 8.0e-85 318.5 385 53.0
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.8e-84 317.4 488 45.5
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.2e-83 314.7 461 46.0
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-83 313.9 517 44.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 4.4e-83 312.8 451 46.3
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 5.8e-83 312.4 356 54.8
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 9.8e-83 311.6 335 53.7
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.9e-82 309.3 462 45.9
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 8.3e-82 308.5 455 46.4
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 8.3e-82 308.5 462 45.5
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.1e-81 306.2 461 45.6
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 5.4e-81 305.8 314 55.7
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 1.6e-80 304.3 462 45.0
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.7e-80 303.5 456 45.2
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.7e-80 303.5 441 46.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 3.5e-80 303.1 489 44.2
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 4.6e-80 302.8 475 41.9
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.0e-80 302.4 466 46.8
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-79 301.6 341 52.8
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.7e-79 300.8 333 53.5
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.9e-79 299.7 339 52.8
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 3.9e-79 299.7 361 51.0
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.9e-78 297.4 482 41.1
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 4.3e-78 296.2 473 44.4
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.6e-77 294.3 496 44.2
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 2.8e-77 293.5 403 46.7
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 2.8e-77 293.5 461 44.5
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 3.1e-76 290.0 402 45.5
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.9e-76 288.5 506 41.9
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-75 288.1 451 45.7
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.4e-75 286.2 393 48.1
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 9.9e-75 285.0 401 45.4
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 2.9e-74 283.5 504 41.7
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.9e-74 282.7 369 48.5
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 6.4e-74 282.3 326 50.9
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 8.3e-74 282.0 330 52.1
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 8.3e-74 282.0 453 43.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 5.4e-73 279.3 333 51.1
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.2e-73 278.5 323 51.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.2e-72 278.1 378 48.1
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-72 278.1 374 48.4
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.2e-72 278.1 299 56.2
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.6e-72 277.7 462 42.6
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.3e-71 273.9 406 44.1
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 6.6e-71 272.3 484 41.1
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 8.6e-71 271.9 310 52.6
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 1.5e-70 271.2 442 42.1
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.9e-70 270.8 406 44.1
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 7.3e-70 268.9 309 52.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 9.5e-70 268.5 306 52.6
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.4e-68 264.6 495 37.4
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 3.1e-68 263.5 316 53.2
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 4.0e-68 263.1 217 67.7
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 5.2e-68 262.7 313 51.4
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.2e-68 262.7 483 42.7
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.5e-67 261.2 306 52.3
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 2.6e-67 260.4 311 50.5
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 3.4e-67 260.0 360 46.9
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 5.8e-67 259.2 273 52.7
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.9e-66 256.9 413 42.4
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 4.2e-65 253.1 297 51.9
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 9.2e-65 251.9 369 45.8
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 9.2e-65 251.9 189 67.2
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.3e-63 248.1 308 51.9
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.3e-63 248.1 308 51.9
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.7e-63 247.7 295 51.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.3e-63 247.3 429 43.1
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.1e-63 246.1 308 49.7
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 3.3e-62 243.4 273 53.1
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.8e-61 240.4 301 50.5
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 4.7e-61 239.6 324 49.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.4e-60 238.0 289 50.5
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.1e-57 228.4 247 52.2
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 3.5e-56 223.4 443 37.7
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 4.6e-56 223.0 335 46.0
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.2e-48 198.4 340 41.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.6e-48 198.0 322 42.5
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.9e-46 191.0 317 44.2
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 6.2e-45 186.0 189 55.6
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 3.1e-44 183.7 332 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.0e-44 183.3 395 37.0
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 6.9e-44 182.6 387 37.5
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.2e-43 181.8 399 39.6
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.9e-43 178.7 333 39.6
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 2.9e-42 177.2 232 47.4
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 4.9e-42 176.4 268 44.8
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 3.5e-40 170.2 134 68.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.6e-40 169.9 191 50.3
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 7.9e-40 169.1 218 48.6
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.3e-39 167.5 315 38.7
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.1e-38 165.2 152 63.2
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.0e-31 142.1 159 54.7
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.3e-31 141.7 251 41.4
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.9e-30 137.9 93 69.9
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.3e-29 132.9 155 51.6
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 8.2e-29 132.5 363 33.6
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 1.4e-28 131.7 218 41.3
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 3.4e-27 127.1 189 42.9
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 7.7e-27 125.9 139 53.2
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.5e-25 119.8 69 73.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.4e-25 119.0 70 72.9
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.4e-25 119.0 70 75.7
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.6e-24 117.1 70 71.4
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.6e-24 116.7 129 48.1
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 2.3e-23 114.4 114 49.1
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.9e-23 113.6 137 44.5
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 2.8e-21 107.5 80 65.0
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.9e-19 99.8 108 49.1
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.6e-16 90.5 256 34.8
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.7e-16 90.1 256 34.8
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.7e-16 90.1 256 34.8
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 1.1e-14 85.5 82 61.0
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-12 78.6 271 32.8
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.4e-12 77.8 169 34.9
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.0e-12 76.3 89 50.6
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.6e-11 74.3 99 37.4
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.4e-07 62.0 262 29.8
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-06 58.5 65 58.5


User provided reference genes

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