Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02712 Eucalyptus grandis HOM05D000566 ORTHO05D008456 3.3e-107 391.7 201 100.0
COL.COLO4_31322 Corchorus olitorius HOM05D000566 ORTHO05D000686 3.4e-67 258.8 193 71.5
Thecc.06G173200 Theobroma cacao HOM05D000566 ORTHO05D008456 7.5e-67 257.7 190 73.2
Ciclev10016472m.g Citrus clementina HOM05D000566 ORTHO05D008456 3.1e-65 252.3 189 75.1
Duzib192G0190 Durio zibethinus HOM05D000566 ORTHO05D008456 9.1e-65 250.8 191 70.2
Gohir.D06G136400 Gossypium hirsutum HOM05D000566 ORTHO05D008456 5.9e-64 248.1 157 80.3
Gohir.A06G134006 Gossypium hirsutum HOM05D000566 ORTHO05D008456 1.7e-63 246.5 157 80.3
Gorai.010G158600 Gossypium raimondii HOM05D000566 ORTHO05D008456 1.7e-63 246.5 157 79.6
TWI38G1860 Tripterygium wilfordii HOM05D000566 ORTHO05D008456 2.1e-61 239.6 172 75.0
Atru.chr10.1700 Acer truncatum HOM05D000566 ORTHO05D008456 4.7e-61 238.4 161 77.6
CiPaw.09G068300 Carya illinoinensis HOM05D000566 ORTHO05D008456 1.4e-60 236.9 149 81.9
Manes.16G037200 Manihot esculenta HOM05D000566 ORTHO05D008456 3.0e-60 235.7 197 67.5
Lalb_Chr16g0384251 Lupinus albus HOM05D000566 ORTHO05D008456 8.9e-60 234.2 190 70.0
FAN25G1525 Fragaria x ananassa HOM05D000566 ORTHO05D000686 2.0e-59 233.0 158 76.6
Glyma.13G171000 Glycine max HOM05D000566 ORTHO05D008456 3.4e-59 232.3 181 71.3
Lj4g0018718 Lotus japonicus HOM05D000566 ORTHO05D008456 3.4e-59 232.3 182 71.4
PGR042G3563 Punica granatum HOM05D000566 ORTHO05D008456 4.4e-59 231.9 184 67.9
Sed0006380 Sechium edule HOM05D000566 ORTHO05D008456 4.4e-59 231.9 148 80.4
RcHm_v2.0_Chr5g0010321 Rosa chinensis HOM05D000566 ORTHO05D008456 9.8e-59 230.7 201 65.2
Hund23960 Selenicereus undatus HOM05D000566 ORTHO05D008456 9.8e-59 230.7 155 80.0
Phvul.003G058300 Phaseolus vulgaris HOM05D000566 ORTHO05D008456 1.3e-58 230.3 176 70.5
CANSAT35G0195 Cannabis sativa HOM05D000566 ORTHO05D008456 1.7e-58 229.9 206 67.5
Potri.011G064600 Populus trichocarpa HOM05D000566 ORTHO05D008456 1.7e-58 229.9 185 67.6
Rhsim13G0191700 Rhododendron simsii HOM05D000566 ORTHO05D000686 1.7e-58 229.9 184 69.6
Ca_26053_v3 Cicer arietinum L. HOM05D000566 ORTHO05D008456 2.2e-58 229.6 130 87.7
TAR626G0526 Trochodendron aralioides HOM05D000566 ORTHO05D008456 2.2e-58 229.6 155 76.8
Sc05g0007190 Simmondsia chinensis HOM05D000566 ORTHO05D008456 3.7e-58 228.8 199 66.8
FAN21G0306 Fragaria x ananassa HOM05D000566 ORTHO05D008456 4.9e-58 228.4 201 63.7
Prupe.4G059300 Prunus persica HOM05D000566 ORTHO05D008456 4.9e-58 228.4 188 69.7
VMungo0251G1655 Vigna mungo HOM05D000566 ORTHO05D008456 4.9e-58 228.4 144 77.8
Haze_06259 Corylus avellana HOM05D000566 ORTHO05D008456 8.3e-58 227.6 169 73.4
QL05p046292 Quercus lobata HOM05D000566 ORTHO05D008456 8.3e-58 227.6 185 69.7
MELO3C007220.2 Cucumis melo HOM05D000566 ORTHO05D008456 1.4e-57 226.9 169 74.0
FAN11G2813 Fragaria x ananassa HOM05D000566 ORTHO05D008456 1.8e-57 226.5 158 74.7
Lalb_Chr05g0218771 Lupinus albus HOM05D000566 ORTHO05D008456 1.8e-57 226.5 128 87.5
MD10G1282600 Malus domestica HOM05D000566 ORTHO05D008456 1.8e-57 226.5 193 67.9
FvH4_3g07991 Fragaria vesca HOM05D000566 ORTHO05D008456 3.1e-57 225.7 201 63.7
Psat7g118880 Pisum sativum HOM05D000566 ORTHO05D008456 4.1e-57 225.3 197 65.0
AUR62036584 Chenopodium quinoa HOM05D000566 ORTHO05D008456 5.4e-57 224.9 120 92.5
Actinidia16807 Actinidia chinensis HOM05D000566 ORTHO05D008456 9.2e-57 224.2 123 90.2
vmacro03936 Vaccinium macrocarpon HOM05D000566 ORTHO05D008456 1.2e-56 223.8 160 75.6
Sabra11G0046400 Salix brachista HOM05D000566 ORTHO05D008456 3.5e-56 222.2 187 64.7
TPR.G16280 Trifolium pratense HOM05D000566 ORTHO05D008456 3.5e-56 222.2 198 64.6
Ah.09g233690 Amaranthus hybridus HOM05D000566 ORTHO05D008456 5.9e-56 221.5 147 78.2
ClCG01G023650 Citrullus lanatus HOM05D000566 ORTHO05D008456 5.9e-56 221.5 156 76.9
THA.LOC104814247 Tarenaya hassleriana HOM05D000566 ORTHO05D008456 5.9e-56 221.5 169 72.8
GSVIVG01021190001 Vitis vinifera HOM05D000566 ORTHO05D008456 5.9e-56 221.5 122 89.3
Dinv04627 Davidia involucrata HOM05D000566 ORTHO05D008456 7.8e-56 221.1 155 75.5
Hma1.2p1_0437F.1_g152980 Hydrangea macrophylla HOM05D000566 ORTHO05D008456 1.0e-55 220.7 156 74.4
PSO675G8854 Papaver somniferum HOM05D000566 ORTHO05D008456 1.0e-55 220.7 151 74.8
Peaxi162Scf01479g00012 Petunia axillaris HOM05D000566 ORTHO05D008456 1.0e-55 220.7 166 72.3
Medtr4g087740 Medicago truncatula HOM05D000566 ORTHO05D008456 1.7e-55 219.9 132 81.8
Cfa000591 Carpinus fangiana HOM05D000566 ORTHO05D008456 2.3e-55 219.5 165 70.9
Aqoxy1G03201 Aquilegia oxysepala HOM05D000566 ORTHO05D008456 5.0e-55 218.4 124 84.7
Lsat_1_v5_gn_4_50020 Lactuca sativa HOM05D000566 ORTHO05D008456 5.0e-55 218.4 179 69.3
CAN.G337.143 Capsicum annuum HOM05D000566 ORTHO05D008456 6.6e-55 218.0 123 86.2
Sp1g24970 Schrenkiella parvula HOM05D000566 ORTHO05D008456 6.6e-55 218.0 147 74.1
Cc02_g14640 Coffea canephora HOM05D000566 ORTHO05D008456 1.1e-54 217.2 122 87.7
Thhalv10009067m.g Eutrema salsugineum HOM05D000566 ORTHO05D008456 1.5e-54 216.9 130 80.0
Medtr4g087750 Medicago truncatula HOM05D000566 ORTHO05D008456 1.5e-54 216.9 192 66.1
Zm00001eb162000 Zea mays HOM05D000566 ORTHO05D008456 1.9e-54 216.5 171 64.9
AT1G29040 Arabidopsis thaliana HOM05D000566 ORTHO05D008456 2.5e-54 216.1 190 62.1
HanXRQChr07g0186931 Helianthus annuus HOM05D000566 ORTHO05D008456 2.5e-54 216.1 178 66.3
PGSC0003DMG401022314 Solanum tuberosum HOM05D000566 ORTHO05D008456 2.5e-54 216.1 123 86.2
unitig_699.g19342 Utricularia gibba HOM05D000566 ORTHO05D008456 3.3e-54 215.7 145 76.6
ECA234G0195 Erigeron canadensis HOM05D000566 ORTHO05D000686 4.3e-54 215.3 136 77.9
Oeu039926.1 Olea europaea HOM05D000566 ORTHO05D008456 5.6e-54 214.9 128 83.6
EL10Ac8g20507 Beta vulgaris HOM05D000566 ORTHO05D008456 9.5e-54 214.2 205 60.5
CDE02G2902 Ceratophyllum demersum HOM05D000566 ORTHO05D008456 9.5e-54 214.2 136 79.4
Sopen07g032890 Solanum pennellii HOM05D000566 ORTHO05D008456 1.2e-53 213.8 122 86.1
Migut.M01050 Erythranthe guttata HOM05D000566 ORTHO05D008456 1.6e-53 213.4 151 74.2
Solyc07g064690.1 Solanum lycopersicum HOM05D000566 ORTHO05D008456 1.6e-53 213.4 123 85.4
BcaC06g35392 Brassica carinata HOM05D000566 ORTHO05D008456 2.1e-53 213.0 166 69.9
Carub.0001s2723 Capsella rubella HOM05D000566 ORTHO05D008456 2.1e-53 213.0 130 78.5
SGA_v2.0_scaffold1G00030 Striga asiatica HOM05D000566 ORTHO05D008456 2.8e-53 212.6 147 75.5
AL1G42750 Arabidopsis lyrata HOM05D000566 ORTHO05D008456 3.6e-53 212.2 130 78.5
DCAR_004017 Daucus carota HOM05D000566 ORTHO05D008456 3.6e-53 212.2 128 82.0
MBI06_g25985_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D008456 4.7e-53 211.8 127 81.1
MSTRG.7396 Avicennia marina HOM05D000566 ORTHO05D008456 6.1e-53 211.5 188 64.4
C07p16640 Brassica napus HOM05D000566 ORTHO05D008456 6.1e-53 211.5 166 68.7
PSO541G3700 Papaver somniferum HOM05D000566 ORTHO05D008456 6.1e-53 211.5 202 59.4
BcaB03g13911 Brassica carinata HOM05D000566 ORTHO05D008456 1.8e-52 209.9 173 67.6
HPP92_024140 Vanilla planifolia HOM05D000566 ORTHO05D008456 1.8e-52 209.9 136 77.9
CARHR028250 Cardamine hirsuta HOM05D000566 ORTHO05D008456 2.3e-52 209.5 176 65.9
SalBow8G0706 Salvia bowleyana HOM05D000566 ORTHO05D008456 2.3e-52 209.5 183 63.4
A07p11000 Brassica napus HOM05D000566 ORTHO05D008456 1.2e-51 207.2 181 63.5
BraA07t28892Z Brassica rapa HOM05D000566 ORTHO05D008456 1.2e-51 207.2 181 63.5
Os01g0613300 Oryza sativa ssp. japonica HOM05D000566 ORTHO05D008456 1.5e-51 206.8 178 63.5
Pp3c23_18520 Physcomitrium patens HOM05D000566 ORTHO05D008456 1.5e-51 206.8 136 72.1
BolC7t42164H Brassica oleracea HOM05D000566 ORTHO05D008456 3.4e-51 205.7 174 67.2
Aa31LG6G11510 Aethionema arabicum HOM05D000566 ORTHO05D008456 4.4e-51 205.3 159 69.2
Nitab4.5_0000206g0050 Nicotiana tabacum HOM05D000566 ORTHO05D008456 7.0e-49 198.0 198 60.6
Lj2A297T108 Lonicera japonica HOM05D000566 ORTHO05D008456 9.2e-49 197.6 231 54.5
Pp3c24_14610 Physcomitrium patens HOM05D000566 ORTHO05D008456 9.2e-49 197.6 198 56.6
Peaxi162Scf01070g00226 Petunia axillaris HOM05D000566 ORTHO05D008456 1.6e-48 196.8 217 55.3
Glyma.13G170900 Glycine max HOM05D000566 ORTHO05D008456 8.6e-47 191.0 134 70.9
ATR0602G168 Amborella trichopoda HOM05D000566 ORTHO05D008456 7.3e-46 188.0 158 65.2
VMungo0251G1536 Vigna mungo HOM05D000566 ORTHO05D008456 1.6e-45 186.8 134 67.2
AUR62031167 Chenopodium quinoa HOM05D000566 ORTHO05D008456 8.0e-45 184.5 99 92.9
SEGI_28108 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 1.5e-43 180.3 122 68.9
Glyma.04G136400 Glycine max HOM05D000566 ORTHO05D008456 4.4e-43 178.7 122 69.7
arahy.Tifrunner.gnm1.ann1.441UHN Arachis hypogaea HOM05D000566 ORTHO05D008456 1.9e-41 173.3 122 67.2
arahy.Tifrunner.gnm1.ann1.AZL87G Arachis hypogaea HOM05D000566 ORTHO05D008456 4.1e-41 172.2 122 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3192 Anthoceros agrestis HOM05D000566 ORTHO05D008456 1.5e-38 163.7 106 72.6
Cpa.g.sc7.62 Carica papaya HOM05D000566 ORTHO05D008456 3.1e-36 156.0 111 75.7
CsaV3_6G050800 Cucumis sativus L. HOM05D000566 ORTHO05D008456 1.7e-34 150.2 157 61.1
Nn1g04373 Nelumbo nucifera HOM05D000566 ORTHO05D008456 4.9e-34 148.7 102 76.5
FAN16G3553 Fragaria x ananassa HOM05D000566 ORTHO05D008456 1.1e-30 137.5 108 70.4
Nitab4.5_0010317g0010 Nicotiana tabacum HOM05D000566 ORTHO05D008456 1.6e-29 133.7 242 42.6
TWI38G1453 Tripterygium wilfordii HOM05D000566 ORTHO05D008456 2.8e-29 132.9 124 59.7
MCO02G300 Micromonas commoda HOM05D000566 ORTHO05D008456 5.8e-27 125.2 121 53.7
PRCOL_00004523 Prasinoderma coloniale HOM05D000566 ORTHO05D008456 6.2e-21 105.1 121 47.9
TWI38G2220 Tripterygium wilfordii HOM05D000566 ORTHO05D008456 2.6e-19 99.8 144 45.8
Glyma.04G136500 Glycine max HOM05D000566 ORTHO05D008456 4.9e-18 95.5 71 64.8
SEGI_06418 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 1.0e-15 87.8 113 46.9
CSS0020746 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D008456 3.0e-15 86.3 101 55.4
CSS0029795 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D008456 3.0e-15 86.3 101 55.4
CSS0045665 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D008456 1.5e-14 84.0 45 84.4
SEGI_18524 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 1.9e-14 83.6 55 72.7
Sed0003601 Sechium edule HOM05D000566 ORTHO05D008456 4.8e-13 79.0 91 53.8
Cpa.g.sc7.61 Carica papaya HOM05D000566 ORTHO05D008456 3.8e-10 69.3 37 83.8
SEGI_34869 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 9.3e-09 64.7 42 69.0
MBI06_g25984_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D008456 5.1e-07 58.9 52 59.6


User provided reference genes

Program Settings