Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02530 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.6e-67 259.2 127 100.0
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.4e-66 256.1 127 98.4
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.1e-61 237.7 127 91.3
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 6.6e-61 237.3 127 90.6
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.0e-58 228.0 123 89.4
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.2e-57 226.5 127 87.4
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 9.9e-49 196.8 120 78.3
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 6.4e-48 194.1 126 73.8
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 8.4e-48 193.7 127 77.2
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 2.4e-47 192.2 123 75.6
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 2.4e-47 192.2 126 75.4
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 4.2e-47 191.4 126 73.8
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 4.2e-47 191.4 127 74.8
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 7.1e-47 190.7 126 72.2
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 7.1e-47 190.7 126 72.2
TAR626G0116 Trochodendron aralioides HOM05D003832 ORTHO05D004365 7.1e-47 190.7 125 74.4
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 9.3e-47 190.3 126 74.6
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 9.3e-47 190.3 126 73.8
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 1.2e-46 189.9 125 72.0
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 1.2e-46 189.9 120 77.5
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 2.1e-46 189.1 127 72.4
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.5e-46 188.3 123 75.6
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 4.6e-46 188.0 127 70.9
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 6.0e-46 187.6 123 75.6
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 6.0e-46 187.6 123 75.6
FAN08G2334 Fragaria x ananassa HOM05D003832 ORTHO05D004365 6.0e-46 187.6 126 73.0
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 6.0e-46 187.6 127 71.7
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 6.0e-46 187.6 127 73.2
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 7.8e-46 187.2 123 74.0
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 7.8e-46 187.2 126 73.0
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 1.0e-45 186.8 123 74.0
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 1.3e-45 186.4 120 72.5
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 1.3e-45 186.4 120 72.5
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 1.7e-45 186.0 126 71.4
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 1.7e-45 186.0 123 74.0
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.0e-45 185.3 129 71.3
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 3.0e-45 185.3 120 75.8
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 3.9e-45 184.9 126 72.2
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 5.1e-45 184.5 120 70.0
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 8.7e-45 183.7 125 72.0
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 1.9e-44 182.6 126 71.4
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 1.9e-44 182.6 123 73.2
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 3.3e-44 181.8 128 69.5
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 3.3e-44 181.8 123 72.4
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 4.3e-44 181.4 126 71.4
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 5.6e-44 181.0 129 68.2
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 7.3e-44 180.6 127 72.4
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 7.3e-44 180.6 128 69.5
Gohir.A04G090600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 9.6e-44 180.3 123 71.5
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 9.6e-44 180.3 126 69.8
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 1.3e-43 179.9 114 77.2
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 1.6e-43 179.5 120 72.5
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 2.1e-43 179.1 130 70.8
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 2.8e-43 178.7 126 69.8
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 4.8e-43 177.9 126 70.6
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 6.2e-43 177.6 125 71.2
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 6.2e-43 177.6 129 66.7
Eucgr.E02102 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.1e-43 177.2 97 90.7
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 8.1e-43 177.2 125 68.8
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 1.1e-42 176.8 124 68.5
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 1.4e-42 176.4 120 71.7
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 1.8e-42 176.0 121 70.2
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 1.8e-42 176.0 126 69.0
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 2.4e-42 175.6 123 67.5
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 2.4e-42 175.6 114 74.6
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 3.1e-42 175.3 122 71.3
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 3.1e-42 175.3 120 72.5
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 3.1e-42 175.3 122 71.3
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 4.0e-42 174.9 121 71.1
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 4.0e-42 174.9 122 72.1
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 4.0e-42 174.9 120 70.8
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 4.0e-42 174.9 122 72.1
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 5.3e-42 174.5 125 66.4
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 5.3e-42 174.5 132 65.9
FAN22G0067 Fragaria x ananassa HOM05D003832 ORTHO05D004365 6.9e-42 174.1 114 75.4
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 9.0e-42 173.7 122 69.7
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 9.0e-42 173.7 127 66.9
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 1.2e-41 173.3 120 67.5
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 1.2e-41 173.3 121 70.2
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 1.2e-41 173.3 120 70.0
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 1.2e-41 173.3 115 73.0
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 1.5e-41 172.9 123 68.3
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 2.0e-41 172.6 120 70.8
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 2.6e-41 172.2 122 70.5
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 2.6e-41 172.2 114 73.7
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 2.6e-41 172.2 114 71.1
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 3.4e-41 171.8 120 69.2
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 4.5e-41 171.4 126 68.3
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 5.8e-41 171.0 121 67.8
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 7.6e-41 170.6 120 67.5
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 7.6e-41 170.6 120 70.0
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 7.6e-41 170.6 114 71.1
Cc02_g28290 Coffea canephora HOM05D003832 ORTHO05D004365 9.9e-41 170.2 120 68.3
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 1.3e-40 169.9 120 70.8
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 1.3e-40 169.9 120 70.0
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 1.7e-40 169.5 121 68.6
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 1.7e-40 169.5 114 71.1
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 2.2e-40 169.1 114 72.8
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 3.8e-40 168.3 120 67.5
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 3.8e-40 168.3 205 46.8
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 6.4e-40 167.5 121 66.1
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 6.4e-40 167.5 120 68.3
Ah.01g001730 Amaranthus hybridus HOM05D003832 ORTHO05D004365 1.9e-39 166.0 123 65.9
BcaB07g33785 Brassica carinata HOM05D003832 ORTHO05D004365 1.9e-39 166.0 120 69.2
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 3.2e-39 165.2 120 67.5
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 4.2e-39 164.9 124 66.1
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 5.4e-39 164.5 114 69.3
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 9.3e-39 163.7 120 63.3
Aqoxy3G00356 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.2e-38 163.3 120 64.2
Eucgr.E02175 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.6e-38 161.4 104 77.9
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 8.7e-37 157.1 126 63.5
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 1.5e-36 156.4 111 71.2
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.3e-35 153.3 121 62.0
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 1.6e-35 152.9 119 63.9
Cc02_g28310 Coffea canephora HOM05D003832 ORTHO05D004365 2.1e-35 152.5 120 62.5
SEGI_25137 Sequoiadendron giganteum HOM05D003832 ORTHO05D004365 3.7e-35 151.8 127 56.7
arahy.Tifrunner.gnm1.ann1.SNS3QW Arachis hypogaea HOM05D003832 ORTHO05D004365 6.2e-35 151.0 103 71.8
Eucgr.E02551 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.1e-34 148.7 102 75.5
CBR_g19929 Chara braunii HOM05D003832 ORTHO05D004365 1.2e-33 146.7 139 51.8
Mapoly0047s0093 Marchantia polymorpha HOM05D003832 ORTHO05D004365 9.9e-33 143.7 132 53.0
EL10Ac4g09380 Beta vulgaris HOM05D003832 ORTHO05D004365 1.3e-32 143.3 119 57.1
EL10Ac4g09383 Beta vulgaris HOM05D003832 ORTHO05D004365 1.3e-32 143.3 119 57.1
BcaC06g35194 Brassica carinata HOM05D003832 ORTHO05D004365 2.2e-32 142.5 120 62.5
Eucgr.E02142 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.4e-32 140.6 77 89.6
Pp3c14_6040 Physcomitrium patens HOM05D003832 ORTHO05D004365 9.3e-31 137.1 129 51.9
BolC9t57639H Brassica oleracea HOM05D003832 ORTHO05D004365 2.1e-30 136.0 122 59.8
SGA_v2.0_scaffold14G07081 Striga asiatica HOM05D003832 ORTHO05D004365 4.6e-30 134.8 127 55.9
BolC7t42388H Brassica oleracea HOM05D003832 ORTHO05D004365 7.9e-30 134.0 121 59.5
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 1.0e-29 133.7 113 55.8
C07p18790 Brassica napus HOM05D003832 ORTHO05D004365 3.9e-29 131.7 119 57.1
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 6.7e-29 131.0 77 76.6
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 1.5e-28 129.8 77 75.3
Eucgr.E02291 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.5e-28 129.8 118 60.2
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 9.6e-28 127.1 77 77.9
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 4.8e-27 124.8 74 75.7
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 4.0e-26 121.7 76 75.0
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 6.9e-26 120.9 75 70.7
CDE07G0789 Ceratophyllum demersum HOM05D001368 ORTHO05D003846 2.0e-25 119.4 83 67.5
Haze_22022 Corylus avellana HOM05D003832 ORTHO05D004365 2.6e-25 119.0 76 72.4
SGA_v2.0_scaffold231G43408 Striga asiatica HOM05D003832 ORTHO05D004365 2.6e-25 119.0 114 55.3
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 3.8e-24 115.2 114 55.3
Cre12.g509600 Chlamydomonas reinhardtii HOM05D003832 ORTHO05D004365 6.5e-24 114.4 103 53.4
CARHR289090 Cardamine hirsuta HOM05D003832 ORTHO05D004365 1.4e-23 113.2 83 68.7
C09p47960 Brassica napus HOM05D003832 ORTHO05D004365 1.9e-23 112.8 71 71.8
A05p26850 Brassica napus HOM05D003832 ORTHO05D004365 4.2e-23 111.7 74 70.3
A07p42340 Brassica napus HOM05D003832 ORTHO05D004365 4.2e-23 111.7 74 70.3
BraA05t21564Z Brassica rapa HOM05D003832 ORTHO05D004365 4.2e-23 111.7 74 70.3
MCO05G158 Micromonas commoda HOM05D003832 ORTHO05D004365 5.5e-23 111.3 137 48.9
PRCOL_00000145 Prasinoderma coloniale HOM05D003832 ORTHO05D004365 9.3e-23 110.5 108 50.9
Eucgr.E02147 Eucalyptus grandis HOM05D003832 ORTHO05D004365 6.0e-22 107.8 114 50.0
PSO832G0096 Papaver somniferum HOM05D003832 ORTHO05D004365 1.0e-21 107.1 88 59.1
BraA05t20080Z Brassica rapa HOM05D003832 ORTHO05D004365 1.3e-21 106.7 74 68.9
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 3.3e-20 102.1 65 67.7
EL10Ac4g09389 Beta vulgaris HOM05D003832 ORTHO05D004365 2.2e-19 99.4 119 43.7
MD16G1248500 Malus domestica HOM05D003832 ORTHO05D004365 3.7e-19 98.6 66 72.7
Cfa026363 Carpinus fangiana HOM05D011254 ORTHO05D013441 1.1e-18 97.1 96 52.1
Eucgr.E02296 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.1e-18 95.1 51 90.2
AUR62000790 Chenopodium quinoa HOM05D003832 ORTHO05D004365 2.6e-17 92.4 71 63.4
Eucgr.E02248 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.2e-15 85.1 48 81.2
BcaC06g36546 Brassica carinata HOM05D003832 ORTHO05D004365 2.7e-14 82.4 91 52.7
Haze_26440 Corylus avellana HOM05D003832 ORTHO05D004365 2.3e-13 79.3 99 39.4
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 6.7e-13 77.8 49 69.4
CSS0017606 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 2.5e-12 75.9 49 67.3
CSS0037914 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 2.5e-12 75.9 49 67.3
Eucgr.E02304 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.5e-12 75.9 47 76.6
Eucgr.E02600 Eucalyptus grandis HOM05D003832 ORTHO05D004365 6.3e-11 71.2 47 78.7
Os03g0321900 Oryza sativa ssp. japonica HOM05D003832 ORTHO05D004365 5.5e-07 58.2 39 61.5
CSS0018468 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 7.2e-07 57.8 49 63.3
CSS0020950 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 7.2e-07 57.8 49 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1832 Anthoceros agrestis HOM05D003832 ORTHO05D004365 2.1e-06 56.2 34 67.6
Eucgr.E02155 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.1e-06 56.2 34 76.5
Nitab4.5_0000725g0020 Nicotiana tabacum HOM05D003832 ORTHO05D004365 6.1e-06 54.7 28 85.7
Lj5A766G14 Lonicera japonica HOM05D003832 ORTHO05D004365 7.9e-06 54.3 28 78.6


User provided reference genes

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