Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 0.0e+00 1233.8 656 100.0
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 4.8e-248 861.3 733 68.6
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 3.9e-96 356.7 728 36.7
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.1e-94 350.9 728 36.3
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 8.0e-94 349.0 715 35.4
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.4e-93 348.2 661 36.6
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 9.8e-92 342.0 738 33.9
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 7.8e-89 332.4 727 34.8
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 2.5e-87 327.4 740 33.9
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 3.3e-87 327.0 727 34.9
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 4.7e-86 323.2 730 33.3
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 6.2e-86 322.8 732 33.3
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 8.1e-86 322.4 740 33.5
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 8.1e-86 322.4 768 34.2
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 8.9e-85 318.9 738 33.3
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 8.9e-85 318.9 742 32.2
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 1.5e-84 318.2 739 34.1
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.5e-84 318.2 739 32.9
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 2.6e-84 317.4 708 33.3
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 2.2e-83 314.3 739 33.0
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 4.1e-82 310.1 732 32.8
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 7.1e-82 309.3 733 34.0
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 9.2e-82 308.9 739 33.8
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 9.2e-82 308.9 740 32.4
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 3.5e-81 307.0 740 33.0
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 7.8e-81 305.8 743 32.3
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 5.1e-80 303.1 734 33.1
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 1.1e-79 302.0 721 33.3
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 7.3e-79 299.3 724 32.0
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.1e-77 295.4 760 31.8
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 2.0e-76 291.2 714 34.2
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.0e-76 291.2 729 31.4
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.2e-75 287.7 732 30.6
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 2.4e-74 284.3 726 31.5
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 7.1e-74 282.7 735 30.6
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 1.2e-73 282.0 717 31.8
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.6e-73 281.6 689 33.1
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 3.5e-73 280.4 730 30.8
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 4.6e-73 280.0 717 32.8
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 4.6e-73 280.0 778 32.1
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 1.3e-72 278.5 685 32.3
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 3.9e-72 276.9 716 31.4
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 6.6e-72 276.2 725 30.1
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 8.7e-72 275.8 715 32.0
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 4.8e-70 270.0 722 30.5
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 3.1e-69 267.3 719 31.6
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 9.0e-69 265.8 770 31.2
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.5e-68 265.0 586 34.5
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 9.9e-68 262.3 729 30.2
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 9.9e-68 262.3 733 30.2
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 1.7e-67 261.5 778 30.3
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.2e-67 261.2 776 30.4
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 2.9e-67 260.8 724 31.2
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 4.9e-67 260.0 750 31.2
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 6.4e-67 259.6 703 31.6
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 8.4e-67 259.2 712 31.6
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 3.2e-66 257.3 728 30.9
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 3.2e-66 257.3 728 30.9
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.2e-66 256.9 778 30.1
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 5.4e-66 256.5 736 32.6
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 7.1e-66 256.1 656 32.5
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 2.7e-65 254.2 712 29.9
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.0e-65 253.1 774 30.4
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 7.9e-65 252.7 719 30.7
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 1.0e-64 252.3 717 30.3
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 1.3e-64 251.9 801 30.7
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.3e-64 251.1 731 29.3
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.9e-64 250.4 736 29.6
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 5.6e-63 246.5 733 29.1
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 1.3e-62 245.4 749 30.6
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 4.8e-62 243.4 713 30.4
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 8.1e-62 242.7 716 30.2
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 9.0e-61 239.2 730 29.0
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 2.9e-59 234.2 670 30.3
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 5.4e-58 229.9 712 29.1
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 8.7e-56 222.6 720 29.3
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 2.4e-53 214.5 730 27.5
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 3.1e-53 214.2 816 29.0
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 4.0e-53 213.8 715 28.5
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.2e-52 212.2 716 29.3
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 4.9e-51 206.8 636 29.6
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 1.6e-49 201.8 745 27.7
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 1.8e-48 198.4 734 29.3
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 3.0e-48 197.6 439 35.3
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 2.5e-47 194.5 723 27.8
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 7.4e-47 193.0 695 27.9
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 1.4e-45 188.7 701 29.2
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 4.1e-45 187.2 754 28.0
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 9.0e-45 186.0 441 31.7
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 2.0e-44 184.9 638 28.2
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 3.8e-43 180.6 415 35.4
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.9e-42 178.3 559 28.1
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 5.5e-42 176.8 719 27.1
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 1.6e-41 175.3 727 27.0
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 1.6e-41 175.3 662 29.2
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 4.6e-41 173.7 670 27.6
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 7.9e-41 172.9 679 29.5
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 3.0e-40 171.0 737 25.8
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 6.7e-40 169.9 729 26.6
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 1.5e-39 168.7 667 28.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.2e-38 164.9 731 26.3
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 1.2e-36 159.1 731 26.7
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 1.2e-36 159.1 706 26.9
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 3.4e-36 157.5 637 26.5
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 5.9e-36 156.8 708 27.8
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 5.9e-36 156.8 708 27.5
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 7.7e-36 156.4 717 26.5
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 1.1e-34 152.5 664 27.4
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.9e-34 151.8 688 25.6
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 1.9e-34 151.8 302 35.1
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 2.5e-34 151.4 735 25.9
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.1e-33 148.3 711 26.3
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.5e-31 141.4 669 26.3
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 8.2e-30 136.3 524 28.4
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 3.1e-29 134.4 705 25.0
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 1.5e-28 132.1 486 30.5
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 1.5e-28 132.1 707 26.9
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 2.6e-28 131.3 486 30.2
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 3.4e-28 131.0 593 26.0
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 5.0e-27 127.1 658 24.6
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 5.5e-26 123.6 496 28.4
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 2.1e-25 121.7 490 29.8
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 2.1e-25 121.7 490 29.8
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 3.6e-25 120.9 490 29.8
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 3.6e-25 120.9 434 29.7
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.6e-25 120.9 232 34.5
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 6.1e-25 120.2 601 25.5
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 1.4e-24 119.0 482 27.4
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 3.9e-24 117.5 746 23.1
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 2.0e-23 115.2 472 24.4
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 7.4e-23 113.2 474 27.6
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 5.3e-21 107.1 447 27.1
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 5.3e-21 107.1 232 32.3
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.2e-20 105.9 575 24.2
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 1.6e-20 105.5 626 25.6
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 2.0e-20 105.1 504 26.6
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 2.0e-20 105.1 629 24.3
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 7.7e-20 103.2 480 24.8
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.1e-18 99.4 413 22.3
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.6e-17 94.4 381 27.0
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 4.0e-16 90.9 446 25.3
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.3e-15 87.8 555 23.2
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 7.5e-15 86.7 538 25.3
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 4.8e-14 84.0 661 24.5
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 7.0e-13 80.1 541 24.6
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 2.0e-12 78.6 149 44.3
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.0e-12 78.6 599 24.0
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 1.7e-11 75.5 268 32.8
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 1.5e-10 72.4 243 27.6
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 1.2e-09 69.3 236 27.5
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 4.7e-09 67.4 265 26.4
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 5.7e-07 60.5 612 22.2
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 2.2e-06 58.5 344 22.4


User provided reference genes

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