Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-69 265.4 128 100.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-47 193.0 129 78.3
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-46 188.7 129 76.0
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.7e-44 181.0 136 69.1
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.1e-38 161.0 107 74.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-37 159.8 127 70.1
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.5e-32 141.0 72 88.9
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.3e-21 105.9 104 51.9
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.0e-21 105.1 98 53.1
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.0e-20 102.8 106 50.9
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.6e-20 102.4 103 51.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-20 101.7 123 48.0
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.4e-20 100.9 123 47.2
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 9.7e-20 100.5 125 47.2
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 9.7e-20 100.5 119 45.4
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.7e-19 99.8 112 48.2
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.4e-18 96.7 124 44.4
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.4e-18 96.7 106 48.1
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 4.1e-18 95.1 123 43.1
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 4.1e-18 95.1 121 46.3
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 5.3e-18 94.7 101 48.5
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 5.3e-18 94.7 106 50.0
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 7.0e-18 94.4 116 42.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 7.0e-18 94.4 107 48.6
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.6e-17 93.2 100 47.0
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.6e-17 92.4 103 48.5
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 3.5e-17 92.0 107 45.8
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 4.5e-17 91.7 106 49.1
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 4.5e-17 91.7 114 43.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 4.5e-17 91.7 110 46.4
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.5e-17 91.7 99 48.5
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.9e-17 91.3 105 47.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 5.9e-17 91.3 100 49.0
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 7.7e-17 90.9 97 49.5
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 7.7e-17 90.9 105 45.7
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 7.7e-17 90.9 95 51.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.0e-16 90.5 110 47.3
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-16 90.1 105 47.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-16 89.7 128 44.5
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.2e-16 89.4 93 50.5
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.9e-16 89.0 95 50.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.8e-16 88.6 112 45.5
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-16 88.6 113 44.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.0e-16 88.2 106 42.5
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 5.0e-16 88.2 98 44.9
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 6.5e-16 87.8 106 47.2
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 6.5e-16 87.8 104 44.2
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.5e-16 87.8 95 50.5
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 8.5e-16 87.4 112 43.8
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 8.5e-16 87.4 111 48.6
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 8.5e-16 87.4 104 44.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.1e-15 87.0 118 45.8
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.1e-15 87.0 112 43.8
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-15 87.0 101 43.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.5e-15 86.7 133 42.1
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.5e-15 86.7 129 40.3
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-15 86.7 129 39.5
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.5e-15 86.7 107 43.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.9e-15 86.3 100 47.0
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.9e-15 86.3 98 43.9
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.9e-15 86.3 98 43.9
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.5e-15 85.9 101 46.5
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.5e-15 85.9 99 49.5
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.5e-15 85.9 111 48.6
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.5e-15 85.9 143 39.9
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.2e-15 85.5 127 43.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 3.2e-15 85.5 102 45.1
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 3.2e-15 85.5 133 41.4
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.2e-15 85.1 127 43.3
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 4.2e-15 85.1 108 43.5
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.2e-15 85.1 99 46.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 5.5e-15 84.7 106 47.2
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 7.2e-15 84.3 120 41.7
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 9.4e-15 84.0 102 48.0
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 9.4e-15 84.0 112 42.9
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.4e-15 84.0 127 41.7
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 9.4e-15 84.0 110 46.4
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 9.4e-15 84.0 99 44.4
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 9.4e-15 84.0 107 44.9
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.2e-14 83.6 100 46.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-14 83.2 106 48.1
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.6e-14 83.2 103 44.7
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 2.1e-14 82.8 107 43.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.7e-14 82.4 107 42.1
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-14 82.4 109 46.8
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-14 82.4 109 46.8
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 3.6e-14 82.0 108 42.6
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 3.6e-14 82.0 108 42.6
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 3.6e-14 82.0 108 42.6
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 4.7e-14 81.6 97 46.4
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.7e-14 81.6 111 47.7
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 6.1e-14 81.3 108 42.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 6.1e-14 81.3 98 48.0
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.1e-14 81.3 118 44.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.1e-14 81.3 118 44.9
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 8.0e-14 80.9 102 43.1
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.4e-13 80.1 141 34.8
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.4e-13 80.1 96 50.0
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-13 79.7 107 41.1
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-13 79.7 107 41.1
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.8e-13 79.7 109 41.3
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.3e-13 79.3 101 43.6
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.3e-13 79.3 110 40.9
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.3e-13 79.3 144 34.7
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.3e-13 79.3 111 44.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.0e-13 79.0 107 42.1
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.0e-13 79.0 107 42.1
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 3.0e-13 79.0 114 40.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-13 79.0 121 44.6
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.2e-13 78.2 105 44.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.8e-13 77.4 96 51.0
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-12 77.0 107 41.1
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.2e-12 77.0 107 41.1
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.2e-12 77.0 108 45.4
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.0e-12 76.3 130 36.9
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.6e-12 75.9 102 41.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 5.7e-12 74.7 97 41.2
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 7.5e-12 74.3 109 39.4
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 9.8e-12 73.9 98 42.9
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.3e-11 73.6 103 43.7
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-11 73.6 116 42.2
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.3e-11 73.6 98 49.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.7e-11 73.2 99 44.4
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.2e-11 72.8 109 39.4
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 8.3e-11 70.9 118 37.3
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-10 70.5 102 38.2
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.8e-10 69.7 120 40.0
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.8e-10 69.7 120 41.7
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.4e-10 69.3 105 41.0
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-10 69.3 99 46.5
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 5.4e-10 68.2 99 41.4
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 7.0e-10 67.8 107 33.6
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.1e-10 67.4 96 45.8
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.1e-10 67.4 126 37.3
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-09 67.0 110 35.5
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.2e-09 67.0 110 35.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.2e-09 67.0 104 37.5
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.6e-09 66.6 95 41.1
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 2.0e-09 66.2 109 36.7
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.0e-09 66.2 129 38.0
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.7e-09 65.9 102 37.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.7e-09 65.9 104 36.5
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 3.5e-09 65.5 107 32.7
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 3.5e-09 65.5 107 32.7
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 3.5e-09 65.5 107 32.7
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 3.5e-09 65.5 104 35.6
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.5e-09 65.1 103 42.7
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 5.9e-09 64.7 129 36.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.9e-09 64.7 129 36.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.9e-09 64.7 129 36.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 7.7e-09 64.3 109 41.3
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.3e-08 63.5 95 37.9
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 6.5e-08 61.2 94 38.3
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 8.5e-08 60.8 111 36.9
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-07 59.7 69 46.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 2.5e-07 59.3 108 36.1
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 8.0e-06 54.3 108 33.3


User provided reference genes

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