Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02484 Eucalyptus grandis HOM05D001014 ORTHO05D000896 2.6e-68 261.9 134 100.0
Eucgr.D02104 Eucalyptus grandis HOM05D001014 ORTHO05D000896 2.5e-42 175.6 120 78.3
Prupe.5G064500 Prunus persica HOM05D001014 ORTHO05D000896 1.2e-20 103.6 122 52.5
Lj4g0011640 Lotus japonicus HOM05D001014 ORTHO05D000896 1.0e-19 100.5 122 48.4
Eucgr.E00401 Eucalyptus grandis HOM05D001014 ORTHO05D000896 1.3e-19 100.1 120 51.7
Eucgr.J02648 Eucalyptus grandis HOM05D001014 ORTHO05D000896 1.7e-19 99.8 57 87.7
Haze_07938 Corylus avellana HOM05D001014 ORTHO05D000896 2.3e-19 99.4 129 49.6
Cfa012695 Carpinus fangiana HOM05D001014 ORTHO05D000896 1.1e-18 97.1 129 47.3
Dinv39176 Davidia involucrata HOM05D001014 ORTHO05D000896 4.3e-18 95.1 124 46.0
CiPaw.12G049600 Carya illinoinensis HOM05D001014 ORTHO05D000896 7.3e-18 94.4 123 48.0
GSVIVG01005818001 Vitis vinifera HOM05D001014 ORTHO05D000896 7.3e-18 94.4 124 44.4
Cpa.g.sc89.65 Carica papaya HOM05D001014 ORTHO05D000896 9.5e-18 94.0 132 45.5
VMungo0251G2831 Vigna mungo HOM05D001014 ORTHO05D000896 9.5e-18 94.0 128 45.3
Phvul.003G223000 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 2.8e-17 92.4 129 45.0
Ca_21991_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 3.6e-17 92.0 123 46.3
TPR.G37584 Trifolium pratense HOM05D001014 ORTHO05D000896 3.6e-17 92.0 118 48.3
Dinv21667 Davidia involucrata HOM05D001014 ORTHO05D000896 6.2e-17 91.3 131 42.7
Medtr4g100570 Medicago truncatula HOM05D001014 ORTHO05D000896 1.1e-16 90.5 116 48.3
CiPaw.11G082600 Carya illinoinensis HOM05D001014 ORTHO05D000896 2.3e-16 89.4 116 46.6
Psat4g073360 Pisum sativum HOM05D001014 ORTHO05D000896 4.0e-16 88.6 126 44.4
PGR042G2940 Punica granatum HOM05D001014 ORTHO05D000896 5.2e-16 88.2 121 50.4
FAN13G2782 Fragaria x ananassa HOM05D001014 ORTHO05D000896 6.8e-16 87.8 121 49.6
Glyma.17G144400 Glycine max HOM05D001014 ORTHO05D000896 6.8e-16 87.8 123 46.3
FAN04G0375 Fragaria x ananassa HOM05D001014 ORTHO05D000896 2.6e-15 85.9 121 49.6
Glyma.05G062500 Glycine max HOM05D001014 ORTHO05D000896 2.6e-15 85.9 120 42.5
FvH4_5g19550 Fragaria vesca HOM05D001014 ORTHO05D000896 4.4e-15 85.1 122 49.2
FAN18G3617 Fragaria x ananassa HOM05D001014 ORTHO05D000896 4.4e-15 85.1 122 49.2
Sed0000023 Sechium edule HOM05D001014 ORTHO05D000896 4.4e-15 85.1 121 45.5
arahy.Tifrunner.gnm1.ann1.6XTP94 Arachis hypogaea HOM05D001014 ORTHO05D000896 9.9e-15 84.0 136 43.4
Manes.01G084300 Manihot esculenta HOM05D001014 ORTHO05D000896 1.3e-14 83.6 121 44.6
arahy.Tifrunner.gnm1.ann1.FEG3IM Arachis hypogaea HOM05D001014 ORTHO05D000896 1.7e-14 83.2 136 43.4
CSS0009086 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 2.2e-14 82.8 127 42.5
FAN08G3045 Fragaria x ananassa HOM05D001014 ORTHO05D000896 2.9e-14 82.4 121 47.1
RcHm_v2.0_Chr7g0204161 Rosa chinensis HOM05D001014 ORTHO05D000896 2.9e-14 82.4 119 46.2
TAR375G0837 Trochodendron aralioides HOM05D001014 ORTHO05D000896 2.9e-14 82.4 121 43.8
Ciclev10022000m.g Citrus clementina HOM05D001014 ORTHO05D000896 3.7e-14 82.0 126 44.4
Hma1.2p1_1952F.1_g308810 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 3.7e-14 82.0 129 41.9
Sed0000200 Sechium edule HOM05D001014 ORTHO05D000896 3.7e-14 82.0 121 42.1
Atru.chr9.1262 Acer truncatum HOM05D001014 ORTHO05D000896 6.4e-14 81.3 118 43.2
ClCG01G004270 Citrullus lanatus HOM05D001014 ORTHO05D000896 8.4e-14 80.9 126 43.7
CsaV3_5G004470 Cucumis sativus L. HOM05D001014 ORTHO05D000896 8.4e-14 80.9 126 43.7
Hma1.2p1_1136F.1_g260600 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 8.4e-14 80.9 129 41.1
MELO3C005512.2 Cucumis melo HOM05D001014 ORTHO05D000896 1.4e-13 80.1 121 44.6
MD06G1054500 Malus domestica HOM05D001014 ORTHO05D000896 3.2e-13 79.0 114 44.7
MD04G1061000 Malus domestica HOM05D001014 ORTHO05D000896 5.4e-13 78.2 120 43.3
TAR374G1540 Trochodendron aralioides HOM05D001014 ORTHO05D000896 5.4e-13 78.2 128 40.6
arahy.Tifrunner.gnm1.ann1.DA53FY Arachis hypogaea HOM05D001014 ORTHO05D000896 9.2e-13 77.4 122 44.3
arahy.Tifrunner.gnm1.ann1.E179ZT Arachis hypogaea HOM05D001014 ORTHO05D000896 9.2e-13 77.4 122 44.3
Manes.02G041700 Manihot esculenta HOM05D001014 ORTHO05D000896 1.2e-12 77.0 117 44.4
CSS0035616 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 2.1e-12 76.3 132 40.9
Duzib084G1008 Durio zibethinus HOM05D001014 ORTHO05D000896 4.6e-12 75.1 116 42.2
Actinidia31509 Actinidia chinensis HOM05D001014 ORTHO05D000896 6.0e-12 74.7 119 41.2
Thhalv10026175m.g Eutrema salsugineum HOM05D001014 ORTHO05D000896 6.6e-11 71.2 130 39.2
AL7G37220 Arabidopsis lyrata HOM05D001014 ORTHO05D000896 8.6e-11 70.9 128 36.7
Rhsim07G0115300 Rhododendron simsii HOM05D001014 ORTHO05D000896 1.1e-10 70.5 123 38.2
Gohir.A08G167700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.9e-10 69.7 113 42.5
Gohir.D08G186500 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.9e-10 69.7 113 42.5
Gorai.004G196000 Gossypium raimondii HOM05D001014 ORTHO05D000896 1.9e-10 69.7 113 42.5
TWI81G0723 Tripterygium wilfordii HOM05D001014 ORTHO05D000896 1.9e-10 69.7 133 35.3
Thecc.01G392000 Theobroma cacao HOM05D001014 ORTHO05D000896 2.5e-10 69.3 116 41.4
Cc08_g12060 Coffea canephora HOM05D001014 ORTHO05D000896 3.3e-10 68.9 127 37.8
PSO063G3393 Papaver somniferum HOM05D001014 ORTHO05D000896 3.3e-10 68.9 110 40.0
PSO782G1093 Papaver somniferum HOM05D001014 ORTHO05D000896 3.3e-10 68.9 110 40.0
BcaC09g50470 Brassica carinata HOM05D001014 ORTHO05D000896 4.3e-10 68.6 123 35.8
Duzib205G1606 Durio zibethinus HOM05D001014 ORTHO05D000896 5.6e-10 68.2 114 42.1
Duzib068G0391 Durio zibethinus HOM05D001014 ORTHO05D000896 7.3e-10 67.8 114 41.2
Dinv44078 Davidia involucrata HOM05D001014 ORTHO05D000896 1.2e-09 67.0 117 41.0
Lalb_Chr05g0221111 Lupinus albus HOM05D001014 ORTHO05D000896 1.2e-09 67.0 126 38.1
Thecc.03G247100 Theobroma cacao HOM05D001014 ORTHO05D000896 1.2e-09 67.0 113 41.6
Duzib133G1174 Durio zibethinus HOM05D001014 ORTHO05D000896 1.6e-09 66.6 129 39.5
MSTRG.12128 Avicennia marina HOM05D001014 ORTHO05D000896 2.8e-09 65.9 119 36.1
BolC7t45383H Brassica oleracea HOM05D001014 ORTHO05D000896 2.8e-09 65.9 122 37.7
Dinv43638 Davidia involucrata HOM05D001014 ORTHO05D000896 2.8e-09 65.9 119 37.0
Duzib138G0015 Durio zibethinus HOM05D001014 ORTHO05D000896 2.8e-09 65.9 129 38.8
AT4G17440 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 3.6e-09 65.5 128 35.9
Manes.05G052800 Manihot esculenta HOM05D001014 ORTHO05D000896 3.6e-09 65.5 114 37.7
Hma1.2p1_0729F.1_g209500 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 4.7e-09 65.1 119 41.2
Manes.01G271700 Manihot esculenta HOM05D001014 ORTHO05D000896 4.7e-09 65.1 115 38.3
Rhsim07G0034400 Rhododendron simsii HOM05D001014 ORTHO05D000896 4.7e-09 65.1 110 40.0
Sp7g16740 Schrenkiella parvula HOM05D001014 ORTHO05D000896 4.7e-09 65.1 132 36.4
COL.COLO4_37108 Corchorus olitorius HOM05D001014 ORTHO05D000896 6.2e-09 64.7 113 40.7
QL12p011206 Quercus lobata HOM05D001014 ORTHO05D000896 6.2e-09 64.7 39 76.9
THA.LOC104812809 Tarenaya hassleriana HOM05D001014 ORTHO05D000896 6.2e-09 64.7 118 36.4
Carub.0007s2398 Capsella rubella HOM05D001014 ORTHO05D000896 8.1e-09 64.3 118 38.1
Prupe.2G125500 Prunus persica HOM05D001014 ORTHO05D000896 8.1e-09 64.3 117 36.8
SGA_v2.0_scaffold49G18273 Striga asiatica HOM05D001014 ORTHO05D000896 8.1e-09 64.3 121 38.0
AT3G60410 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 1.1e-08 63.9 122 36.9
TAR374G1372 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.1e-08 63.9 123 39.8
Nn4g23898 Nelumbo nucifera HOM05D001014 ORTHO05D000896 1.4e-08 63.5 126 38.1
C07p48750 Brassica napus HOM05D001014 ORTHO05D000896 2.4e-08 62.8 122 36.9
Migut.H01528 Erythranthe guttata HOM05D001014 ORTHO05D000896 2.4e-08 62.8 119 35.3
Sp5g02810 Schrenkiella parvula HOM05D001014 ORTHO05D000896 2.4e-08 62.8 135 36.3
AL5G42660 Arabidopsis lyrata HOM05D001014 ORTHO05D000896 3.1e-08 62.4 122 35.2
Lalb_Chr16g0386591 Lupinus albus HOM05D001014 ORTHO05D000896 3.1e-08 62.4 125 39.2
Solyc08g078310.3 Solanum lycopersicum HOM05D001014 ORTHO05D000896 3.1e-08 62.4 126 35.7
Sopen08g026810 Solanum pennellii HOM05D001014 ORTHO05D000896 3.1e-08 62.4 126 35.7
PGSC0003DMG400026238 Solanum tuberosum HOM05D001014 ORTHO05D000896 3.1e-08 62.4 126 35.7
Hma1.2p1_1740F.1_g300031 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 4.0e-08 62.0 121 40.5
A03p50440 Brassica napus HOM05D001014 ORTHO05D000896 5.2e-08 61.6 122 33.6
BcaC07g40560 Brassica carinata HOM05D001014 ORTHO05D000896 6.8e-08 61.2 123 36.6
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 6.8e-08 61.2 123 36.6
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 6.8e-08 61.2 123 36.6
Thhalv10006081m.g Eutrema salsugineum HOM05D001014 ORTHO05D000896 6.8e-08 61.2 122 35.2
Nn2g11708 Nelumbo nucifera HOM05D001014 ORTHO05D000896 6.8e-08 61.2 133 39.1
Actinidia40392 Actinidia chinensis HOM05D001014 ORTHO05D000896 8.9e-08 60.8 117 36.8
Actinidia10844 Actinidia chinensis HOM05D001014 ORTHO05D000896 1.2e-07 60.5 110 42.7
Lj9P559T19 Lonicera japonica HOM05D001014 ORTHO05D000896 1.2e-07 60.5 118 39.0
Aa31LG10G14510 Aethionema arabicum HOM05D001014 ORTHO05D000896 1.5e-07 60.1 130 32.3
Haze_00622 Corylus avellana HOM05D001014 ORTHO05D000896 1.5e-07 60.1 118 37.3
Gohir.D08G068600 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.5e-07 60.1 116 37.9
Gohir.D11G081100 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.5e-07 60.1 116 35.3
Gorai.004G071800 Gossypium raimondii HOM05D001014 ORTHO05D000896 1.5e-07 60.1 116 37.9
Gorai.007G086800 Gossypium raimondii HOM05D001014 ORTHO05D000896 1.5e-07 60.1 116 35.3
TAR622G0562 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.5e-07 60.1 123 37.4
BraA09t40698Z Brassica rapa HOM05D001014 ORTHO05D000896 2.0e-07 59.7 123 35.8
AUR62019991 Chenopodium quinoa HOM05D001014 ORTHO05D000896 2.0e-07 59.7 123 37.4
Solyc10g039360.2 Solanum lycopersicum HOM05D001014 ORTHO05D000896 2.0e-07 59.7 126 34.9
SGA_v2.0_scaffold159G37701 Striga asiatica HOM05D001014 ORTHO05D000896 2.0e-07 59.7 110 35.5
A01p19910 Brassica napus HOM05D001014 ORTHO05D000896 2.6e-07 59.3 115 33.9
BraA01t01917Z Brassica rapa HOM05D001014 ORTHO05D000896 2.6e-07 59.3 115 33.9
Gohir.A08G059400 Gossypium hirsutum HOM05D001014 ORTHO05D000896 2.6e-07 59.3 116 37.9
Gohir.A11G076700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 2.6e-07 59.3 116 36.2
vmacro13482 Vaccinium macrocarpon HOM05D001014 ORTHO05D000896 2.6e-07 59.3 110 35.5
Sopen10g012080 Solanum pennellii HOM05D001014 ORTHO05D000896 3.4e-07 58.9 126 34.9
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 4.4e-07 58.5 123 35.8
CARHR224050 Cardamine hirsuta HOM05D001014 ORTHO05D000896 4.4e-07 58.5 133 33.1
Carub.0005s2714 Capsella rubella HOM05D001014 ORTHO05D000896 5.8e-07 58.2 117 33.3
DCAR_006846 Daucus carota HOM05D001014 ORTHO05D000896 5.8e-07 58.2 114 33.3
BraA03t14134Z Brassica rapa HOM05D001014 ORTHO05D000896 7.6e-07 57.8 121 33.9
Cpa.g.sc101.33 Carica papaya HOM05D001014 ORTHO05D000896 7.6e-07 57.8 121 35.5
Haze_02801 Corylus avellana HOM05D001014 ORTHO05D000896 7.6e-07 57.8 118 37.3
Oeu040700.1 Olea europaea HOM05D001014 ORTHO05D000896 7.6e-07 57.8 129 32.6
unitig_749.g13633 Utricularia gibba HOM05D001014 ORTHO05D007637 7.6e-07 57.8 121 30.6
MSTRG.14667 Avicennia marina HOM05D001014 ORTHO05D000896 9.9e-07 57.4 119 34.5
MSTRG.17141 Avicennia marina HOM05D001014 ORTHO05D000896 9.9e-07 57.4 114 32.5
EL10Ac5g12333 Beta vulgaris HOM05D001014 ORTHO05D000896 9.9e-07 57.4 124 33.1
BcaC07g42782 Brassica carinata HOM05D001014 ORTHO05D000896 9.9e-07 57.4 125 37.6
BcaC07g42783 Brassica carinata HOM05D001014 ORTHO05D000896 9.9e-07 57.4 125 37.6
CARHR170730 Cardamine hirsuta HOM05D001014 ORTHO05D000896 9.9e-07 57.4 126 36.5
Potri.010G122700 Populus trichocarpa HOM05D001014 ORTHO05D000896 9.9e-07 57.4 125 36.8
Aa31LG6G190 Aethionema arabicum HOM05D001014 ORTHO05D000896 1.3e-06 57.0 120 38.3
DCAR_025074 Daucus carota HOM05D001014 ORTHO05D000896 1.3e-06 57.0 119 35.3
Lsat_1_v5_gn_7_10501 Lactuca sativa HOM05D001014 ORTHO05D000896 1.3e-06 57.0 118 35.6
SGA_v2.0_scaffold14G06882 Striga asiatica HOM05D001014 ORTHO05D000896 1.3e-06 57.0 127 33.9
Oeu028310.1 Olea europaea HOM05D001014 ORTHO05D000896 1.7e-06 56.6 129 33.3
Dinv21059 Davidia involucrata HOM05D001014 ORTHO05D000896 2.2e-06 56.2 122 36.1
MD13G1039500 Malus domestica HOM05D001014 ORTHO05D000896 2.2e-06 56.2 125 37.6
Solyc04g007340.4 Solanum lycopersicum HOM05D001014 ORTHO05D000896 2.2e-06 56.2 119 35.3
Actinidia13656 Actinidia chinensis HOM05D001014 ORTHO05D000896 2.9e-06 55.8 118 37.3
Actinidia38375 Actinidia chinensis HOM05D001014 ORTHO05D000896 2.9e-06 55.8 116 37.9
CSS0029672 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 2.9e-06 55.8 119 37.0
CSS0039665 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 2.9e-06 55.8 119 37.0
Eucgr.G02774 Eucalyptus grandis HOM05D001014 ORTHO05D000896 2.9e-06 55.8 43 62.8
HanXRQChr03g0088951 Helianthus annuus HOM05D001014 ORTHO05D000896 2.9e-06 55.8 110 36.4
Peaxi162Scf00346g01015 Petunia axillaris HOM05D001014 ORTHO05D000896 2.9e-06 55.8 43 60.5
Actinidia35094 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.8e-06 55.5 125 34.4
MSTRG.13545 Avicennia marina HOM05D001014 ORTHO05D000896 3.8e-06 55.5 128 36.7
Duzib268G1879 Durio zibethinus HOM05D001014 ORTHO05D000896 3.8e-06 55.5 112 33.9
Lj7P543T31 Lonicera japonica HOM05D001014 ORTHO05D000896 3.8e-06 55.5 118 32.2
Nitab4.5_0007091g0010 Nicotiana tabacum HOM05D001014 ORTHO05D000896 3.8e-06 55.5 121 31.4
BcaC06g33569 Brassica carinata HOM05D001014 ORTHO05D000896 4.9e-06 55.1 126 30.2
Nn3g17894 Nelumbo nucifera HOM05D001014 ORTHO05D000896 4.9e-06 55.1 135 34.8
Rhsim09G0106000 Rhododendron simsii HOM05D001014 ORTHO05D000896 4.9e-06 55.1 130 36.2
Sopen04g002400 Solanum pennellii HOM05D001014 ORTHO05D000896 4.9e-06 55.1 119 35.3
Migut.N01754 Erythranthe guttata HOM05D001014 ORTHO05D000896 6.4e-06 54.7 111 35.1
Gorai.008G158100 Gossypium raimondii HOM05D001014 ORTHO05D000896 6.4e-06 54.7 118 33.9
HanXRQChr06g0164471 Helianthus annuus HOM05D001014 ORTHO05D000896 6.4e-06 54.7 110 33.6
SalBow7G1348 Salvia bowleyana HOM05D001014 ORTHO05D000896 6.4e-06 54.7 117 32.5
SalBow7G1696 Salvia bowleyana HOM05D001014 ORTHO05D000896 6.4e-06 54.7 117 32.5
Aqoxy3G00254 Aquilegia oxysepala HOM05D001014 ORTHO05D000896 8.4e-06 54.3 127 33.9
Lsat_1_v5_gn_4_46740 Lactuca sativa HOM05D001014 ORTHO05D000896 8.4e-06 54.3 118 32.2
HPP92_000175 Vanilla planifolia HOM05D001014 ORTHO05D000896 8.4e-06 54.3 116 31.9


User provided reference genes

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