Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 3274.2 1716 100.0
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2555.0 1718 75.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2472.2 1724 73.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2434.4 1725 72.4
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2426.4 1719 72.0
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2425.2 1707 72.2
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2424.0 1718 73.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2414.8 1709 72.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2408.3 1721 72.1
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2405.6 1723 71.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2390.5 1719 71.7
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2390.1 1703 71.7
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2388.6 1714 71.4
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2387.5 1722 71.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2385.5 1716 71.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2376.7 1722 70.9
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2374.7 1704 71.7
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2371.3 1723 71.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2367.4 1737 70.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2362.4 1713 70.6
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2355.1 1742 70.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2344.7 1725 69.8
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2334.3 1713 70.1
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2333.9 1690 72.4
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2330.8 1704 70.1
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2326.2 1722 70.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2320.4 1713 69.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2319.7 1713 69.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2318.9 1730 69.4
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2315.8 1718 69.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2314.3 1719 69.5
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2313.9 1722 70.2
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2284.6 1681 68.3
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2279.2 1718 69.4
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2278.1 1722 69.3
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2277.3 1722 68.2
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2274.6 1718 67.8
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2274.2 1693 68.7
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2253.0 1687 68.9
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2237.2 1726 68.4
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2232.6 1697 67.6
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2221.0 1782 66.2
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2209.5 1726 66.3
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2209.5 1706 66.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2204.9 1719 65.9
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2204.1 1713 65.4
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2201.8 1721 66.1
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2187.5 1715 65.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2187.1 1720 64.8
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2183.7 1741 65.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2180.6 1715 65.7
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2177.1 1730 65.5
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2173.3 1710 65.9
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2170.2 1708 65.6
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2168.3 1760 66.2
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2165.2 1718 65.4
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2161.7 1776 64.6
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2160.6 1754 64.4
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2152.1 1700 66.6
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2150.2 1666 66.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2147.5 1738 64.6
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2147.5 1725 63.2
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2144.4 1860 62.9
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2143.6 1717 64.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2139.0 1739 64.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2131.3 1414 74.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2124.7 1716 64.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2123.6 1729 64.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2122.1 1737 63.7
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2117.8 1731 64.0
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2113.2 1730 64.0
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2108.6 1696 64.1
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2101.6 1728 63.5
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2092.8 1708 63.2
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2089.7 1679 64.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2057.7 1656 63.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2041.5 1498 68.8
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2028.1 1737 61.4
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2020.0 1703 61.6
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2018.8 2129 54.8
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2010.0 1296 73.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1996.5 1292 73.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1969.9 1716 58.7
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1968.0 1721 60.4
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1959.5 1689 60.1
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1927.5 1750 58.1
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1915.2 1702 59.2
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1913.7 1160 78.5
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1878.6 1459 65.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1861.7 1686 59.3
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1808.9 1804 56.3
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1756.9 1732 60.2
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1722.2 1537 57.5
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1691.4 1455 63.2
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1682.5 1732 52.0
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1676.8 1717 51.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1673.7 1717 52.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1642.9 1571 53.9
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1617.8 1045 74.3
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1468.4 936 74.5
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1458.7 1084 63.4
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1426.0 1142 67.2
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1356.3 1094 67.2
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1313.1 1390 52.2
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1305.4 1178 61.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1129.0 909 61.7
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1099.3 918 65.3
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.3e-292 1010.7 741 65.9
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.4e-283 979.9 616 76.8
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.1e-264 917.9 682 62.6
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 4.6e-258 896.0 601 71.4
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 8.4e-252 875.2 551 76.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.4e-240 835.5 743 62.6
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 8.3e-215 752.3 1589 33.3
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.8e-201 708.0 847 41.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-188 664.5 424 75.9
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.9e-164 583.9 376 75.3
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 3.3e-155 554.3 329 82.7
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 5.1e-148 530.4 585 57.8
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.8e-124 452.2 889 33.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.7e-122 444.5 637 51.8
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.6e-115 421.8 698 38.1
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 7.5e-107 393.7 332 65.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 6.3e-106 390.6 241 78.4
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.0e-104 385.6 430 44.9
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 2.0e-104 385.6 310 70.6
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.9e-102 379.0 246 68.7
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.6e-93 348.2 214 73.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.0e-79 301.2 189 77.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 4.0e-76 291.6 381 53.0
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.8e-69 268.9 176 66.5
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 4.1e-65 255.0 176 65.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.6e-56 224.9 150 70.7
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.4e-49 201.4 208 45.2
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.0e-47 197.2 115 85.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 2.1e-45 189.5 129 65.9
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.2e-42 179.5 98 90.8
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 5.4e-41 174.9 432 37.7
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 5.6e-38 164.9 129 54.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 3.2e-33 149.1 205 46.3
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 8.2e-29 134.4 123 52.0
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 5.3e-28 131.7 169 45.6
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.1e-25 124.0 107 57.0
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.6e-24 118.6 73 78.1
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 6.0e-24 118.2 148 49.3
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.8e-23 116.7 71 73.2
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.9e-23 115.5 63 88.9
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 5.1e-23 115.2 214 37.4
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-22 114.0 93 61.3
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.5e-22 113.6 88 61.4
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.7e-22 110.9 61 82.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 6.3e-21 108.2 75 73.3
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 6.5e-18 98.2 71 64.8
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 4.2e-17 95.5 57 82.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.6e-16 92.4 99 44.4
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.3e-14 85.9 57 77.2
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.7e-14 85.1 287 32.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 7.4e-14 84.7 91 49.5
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.3e-13 84.0 50 88.0
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.8e-13 82.8 57 59.6
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.4e-12 79.7 119 49.6
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 5.3e-12 78.6 51 68.6
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.2e-09 69.3 41 78.0
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 4.2e-09 68.9 92 40.2
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 7.2e-09 68.2 44 77.3
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 9.4e-09 67.8 81 54.3
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.2e-08 67.4 279 33.7
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 2.7e-08 66.2 35 85.7
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 4.7e-08 65.5 40 65.0
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 3.0e-07 62.8 165 29.7
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 3.9e-07 62.4 136 32.4
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 1.5e-06 60.5 68 45.6
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 3.3e-06 59.3 57 47.4
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 7.4e-06 58.2 54 50.0
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 9.7e-06 57.8 44 56.8


User provided reference genes

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