Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.2e-196 688.7 334 100.0
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.4e-179 632.1 334 91.3
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 9.6e-144 513.8 333 73.0
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.6e-143 513.1 339 73.2
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.4e-142 510.0 339 72.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.8e-142 509.6 338 72.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 3.1e-142 508.8 338 73.7
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-141 506.9 332 72.6
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.5e-141 506.5 338 72.8
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 1.5e-141 506.5 338 72.2
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.5e-141 506.5 332 72.6
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 4.5e-141 505.0 340 71.5
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.3e-140 503.4 336 70.8
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 1.7e-140 503.1 326 72.4
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.2e-140 502.7 336 72.3
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 2.2e-140 502.7 332 72.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.9e-140 502.3 332 71.1
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.9e-140 502.3 332 71.1
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.4e-139 500.0 333 71.5
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.4e-139 500.0 337 71.8
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.4e-139 500.0 335 71.6
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.4e-139 500.0 333 71.5
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.9e-139 499.6 338 71.9
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.9e-139 499.6 330 73.9
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.5e-139 499.2 333 73.0
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-139 498.8 338 71.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 4.2e-139 498.4 327 72.8
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 5.5e-139 498.0 338 71.6
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 5.5e-139 498.0 328 71.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 9.3e-139 497.3 338 72.2
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.2e-138 496.9 338 71.3
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.2e-138 496.9 328 72.3
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.2e-138 496.9 329 72.0
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.6e-138 496.5 339 72.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.6e-138 496.5 337 71.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 2.1e-138 496.1 338 71.9
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.0e-138 494.6 336 70.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 7.9e-138 494.2 328 71.0
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.3e-137 493.4 338 71.9
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.8e-137 493.0 328 70.7
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.3e-137 492.7 337 70.6
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 6.7e-137 491.1 327 73.4
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 8.7e-137 490.7 328 70.1
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 8.7e-137 490.7 334 71.0
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 8.7e-137 490.7 338 69.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.1e-136 490.3 337 70.3
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.5e-136 490.0 336 69.9
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.5e-136 490.0 336 69.9
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.7e-136 488.0 338 71.3
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 5.7e-136 488.0 334 70.7
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 7.4e-136 487.6 322 71.1
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 7.4e-136 487.6 328 70.7
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 7.4e-136 487.6 338 68.9
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 7.4e-136 487.6 328 70.4
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.6e-136 487.3 327 71.6
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 9.6e-136 487.3 338 71.0
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.1e-135 486.1 336 70.8
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.7e-135 485.3 338 68.3
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 6.3e-135 484.6 332 68.1
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 6.3e-135 484.6 330 68.2
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.4e-134 482.6 330 69.1
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.4e-134 482.6 331 69.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 9.0e-134 480.7 339 69.6
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.2e-133 480.3 338 70.1
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.5e-133 479.9 338 68.0
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.0e-133 479.6 328 70.1
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.0e-132 477.2 347 67.4
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.7e-132 476.5 327 70.3
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.8e-132 475.3 328 68.3
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 8.4e-132 474.2 329 67.5
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 8.4e-132 474.2 328 68.9
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.1e-131 473.8 328 68.6
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-131 473.4 330 67.6
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.2e-131 472.2 328 69.5
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 3.2e-131 472.2 344 68.3
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.6e-130 469.9 328 68.3
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.6e-130 469.9 328 68.3
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.6e-130 469.9 329 66.6
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.3e-129 466.8 331 67.7
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 6.7e-129 464.5 328 66.2
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.1e-128 463.8 337 68.0
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.3e-128 462.2 331 66.5
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 6.9e-126 454.5 333 66.7
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.5e-125 453.4 331 64.0
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 3.4e-125 452.2 345 66.1
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.3e-124 450.3 337 66.8
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.2e-124 449.5 330 65.8
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 4.2e-123 445.3 332 64.2
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 7.2e-123 444.5 332 65.1
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 6.1e-122 441.4 326 66.0
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.1e-122 441.4 337 64.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.0e-121 439.1 326 66.9
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 8.8e-121 437.6 335 62.4
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.0e-120 436.4 332 62.7
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.0e-120 436.4 336 63.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 7.4e-120 434.5 334 62.9
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.7e-119 433.3 333 64.6
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 2.2e-119 433.0 327 64.2
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 2.2e-119 433.0 302 67.9
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 6.3e-119 431.4 326 64.4
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 8.2e-119 431.0 326 64.1
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.1e-118 430.6 330 63.0
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 2.6e-117 426.0 335 62.4
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.3e-116 423.7 323 63.5
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.7e-116 423.3 330 62.7
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 6.5e-116 421.4 331 63.1
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 7.2e-115 417.9 326 62.0
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-112 410.6 331 61.0
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 5.7e-112 408.3 332 61.1
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 5.7e-112 408.3 322 62.1
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.3e-111 407.1 330 61.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.8e-111 406.0 289 67.8
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 5.9e-109 398.3 377 54.1
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 6.5e-108 394.8 317 63.1
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 4.2e-107 392.1 289 64.7
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.7e-106 388.7 327 60.6
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 8.8e-105 384.4 252 72.6
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 7.5e-104 381.3 320 58.4
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.6e-96 356.3 261 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.2e-90 337.4 381 49.1
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.0e-89 334.3 348 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.3e-89 333.2 342 51.2
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 5.4e-86 322.0 216 73.6
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.8e-84 315.8 274 58.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 9.5e-83 311.2 302 55.3
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.6e-80 303.1 208 69.2
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.6e-80 303.1 338 49.7
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.3e-79 300.8 339 48.1
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.1e-74 283.5 394 43.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 5.2e-73 278.9 408 41.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.2e-71 273.5 185 69.7
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 6.6e-68 261.9 249 53.4
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.3e-57 226.9 184 58.7
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 5.8e-56 222.2 182 60.4
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.1e-54 218.0 380 35.8
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 3.5e-53 213.0 157 69.4
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 5.8e-48 195.7 328 38.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 7.6e-48 195.3 143 64.3
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 6.6e-44 182.2 247 42.9
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-42 177.9 156 55.8
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.2e-40 171.4 134 60.4
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 6.4e-39 165.6 136 57.4
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 6.4e-39 165.6 136 57.4
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 1.0e-28 131.7 109 61.5
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.0e-28 130.2 91 68.1
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 3.0e-28 130.2 88 68.2
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.1e-26 124.0 152 44.7
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 2.5e-19 100.5 412 25.5
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 3.1e-17 93.6 76 57.9
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-16 90.1 67 62.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 7.2e-14 82.4 67 59.7
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 3.7e-10 70.1 58 56.9
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.3e-09 66.2 61 63.9
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.3e-09 66.2 39 69.2
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 9.1e-09 65.5 89 40.4


User provided reference genes

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