Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 8.0e-42 173.3 87 100.0
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 1.1e-19 99.8 55 90.9
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 7.1e-14 80.5 55 74.5
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 1.7e-12 75.9 55 67.3
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.7e-12 75.9 55 67.3
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.7e-12 75.9 55 67.3
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 6.6e-12 73.9 55 65.5
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 6.6e-12 73.9 55 67.3
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 1.1e-11 73.2 48 72.9
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 1.5e-11 72.8 55 67.3
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 3.3e-11 71.6 55 63.6
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 4.3e-11 71.2 55 63.6
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 5.6e-11 70.9 55 63.6
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 7.3e-11 70.5 55 63.6
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 7.3e-11 70.5 54 64.8
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 9.6e-11 70.1 55 63.6
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 9.6e-11 70.1 55 61.8
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 9.6e-11 70.1 55 65.5
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.3e-10 69.7 55 61.8
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 1.3e-10 69.7 55 60.0
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 1.6e-10 69.3 55 60.0
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.6e-10 69.3 55 63.6
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 2.1e-10 68.9 55 61.8
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 2.8e-10 68.6 55 61.8
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 3.6e-10 68.2 55 61.8
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 3.6e-10 68.2 55 58.2
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 3.6e-10 68.2 68 52.9
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 3.6e-10 68.2 55 58.2
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 8.1e-10 67.0 55 61.8
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 8.1e-10 67.0 55 60.0
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 8.1e-10 67.0 55 60.0
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 1.1e-09 66.6 67 52.2
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 1.1e-09 66.6 55 60.0
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 1.1e-09 66.6 55 58.2
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 1.8e-09 65.9 55 60.0
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 2.4e-09 65.5 55 56.4
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 2.4e-09 65.5 55 60.0
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 3.1e-09 65.1 55 60.0
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.1e-09 65.1 47 63.8
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 5.3e-09 64.3 55 58.2
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 6.9e-09 63.9 55 58.2
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 6.9e-09 63.9 55 58.2
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 6.9e-09 63.9 55 54.5
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 9.0e-09 63.5 51 58.8
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 9.0e-09 63.5 55 56.4
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 1.2e-08 63.2 55 54.5
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.5e-08 62.8 70 51.4
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 1.5e-08 62.8 55 54.5
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.5e-08 62.8 47 57.4
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 1.5e-08 62.8 55 56.4
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 1.5e-08 62.8 51 54.9
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 1.5e-08 62.8 51 54.9
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 2.0e-08 62.4 55 56.4
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 2.0e-08 62.4 55 50.9
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 2.6e-08 62.0 55 60.0
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 3.4e-08 61.6 43 67.4
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 3.4e-08 61.6 43 67.4
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 4.4e-08 61.2 55 52.7
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 4.4e-08 61.2 47 61.7
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 5.8e-08 60.8 68 48.5
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 5.8e-08 60.8 55 52.7
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 7.6e-08 60.5 55 56.4
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 7.6e-08 60.5 55 56.4
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 7.6e-08 60.5 47 61.7
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 7.6e-08 60.5 51 54.9
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 9.9e-08 60.1 55 56.4
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 9.9e-08 60.1 55 56.4
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 1.7e-07 59.3 56 57.1
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.7e-07 59.3 70 50.0
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 1.7e-07 59.3 55 54.5
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.7e-07 59.3 55 52.7
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 1.7e-07 59.3 55 54.5
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 2.2e-07 58.9 70 48.6
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.2e-07 58.9 46 65.2
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 2.9e-07 58.5 47 59.6
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.9e-07 58.5 55 52.7
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 3.8e-07 58.2 43 65.1
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 3.8e-07 58.2 65 44.6
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 3.8e-07 58.2 67 44.8
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 3.8e-07 58.2 55 50.9
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 3.8e-07 58.2 55 52.7
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 4.9e-07 57.8 55 52.7
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 4.9e-07 57.8 55 47.3
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 8.4e-07 57.0 44 61.4
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 8.4e-07 57.0 51 52.9
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 1.9e-06 55.8 43 62.8
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 1.9e-06 55.8 81 44.4
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.9e-06 55.8 52 57.7
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 2.4e-06 55.5 43 60.5
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 2.4e-06 55.5 43 62.8
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 2.4e-06 55.5 43 62.8
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 2.4e-06 55.5 60 48.3
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 4.2e-06 54.7 51 51.0
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 4.2e-06 54.7 51 47.1
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 5.4e-06 54.3 44 56.8
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 5.4e-06 54.3 44 56.8
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 5.4e-06 54.3 44 56.8
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 9.3e-06 53.5 51 51.0


User provided reference genes

Program Settings