Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.4e-182 644.0 738 100.0
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 7.7e-85 319.3 706 77.6
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.1e-83 315.5 720 80.6
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.4e-83 315.1 705 81.0
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 3.2e-83 313.9 730 78.6
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.2e-82 312.0 721 78.9
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 2.1e-82 311.2 720 79.9
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 3.0e-81 307.4 681 83.3
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 3.9e-81 307.0 679 82.3
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 5.2e-81 306.6 712 71.5
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 5.2e-81 306.6 670 83.1
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.5e-80 305.1 678 82.6
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.7e-79 300.4 673 83.5
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 2.4e-78 297.7 674 82.5
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 3.5e-77 293.9 670 83.0
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 4.5e-77 293.5 664 82.7
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.2e-76 291.2 720 78.3
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 3.8e-76 290.4 281 69.4
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 1.5e-75 288.5 726 77.8
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 7.2e-75 286.2 665 79.2
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 2.7e-74 284.3 665 82.7
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.0e-73 282.3 719 77.1
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 2.3e-73 281.2 675 82.4
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 5.2e-73 280.0 665 82.6
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.8e-73 279.3 665 83.0
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.2e-72 278.9 292 77.7
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.5e-72 278.5 654 84.4
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 2.6e-72 277.7 748 76.1
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 2.8e-71 274.2 665 82.7
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.8e-70 271.6 294 71.4
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.4e-70 271.2 665 82.6
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 3.1e-70 270.8 672 82.6
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-70 270.0 279 79.2
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 9.1e-70 269.2 681 80.2
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.5e-69 267.3 665 82.4
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 3.5e-69 267.3 728 76.4
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.0e-68 265.8 728 76.2
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.0e-68 265.8 727 75.2
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 5.0e-68 263.5 723 78.6
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 8.5e-68 262.7 703 78.4
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 4.2e-67 260.4 673 81.1
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 4.7e-66 256.9 670 80.9
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.7e-66 256.9 634 85.0
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 6.1e-66 256.5 733 75.2
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.8e-65 255.0 670 80.6
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.8e-65 255.0 670 80.6
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 2.3e-65 254.6 670 81.5
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 3.4e-64 250.8 724 76.4
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.7e-63 248.4 301 60.1
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 1.1e-62 245.7 718 75.8
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 1.4e-62 245.4 167 70.7
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.8e-62 245.0 718 76.2
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 4.1e-62 243.8 729 75.7
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 4.5e-61 240.4 673 80.4
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.9e-59 235.0 725 75.6
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 2.5e-59 234.6 708 75.4
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 9.5e-59 232.6 205 58.0
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.7e-58 230.3 167 66.5
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 4.7e-58 230.3 712 70.5
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 6.1e-58 229.9 700 76.7
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 6.8e-57 226.5 328 61.3
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.5e-56 225.3 167 65.3
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.5e-56 225.3 159 68.6
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.0e-56 224.9 192 59.4
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.0e-56 224.9 698 72.1
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 4.4e-56 223.8 197 57.9
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 2.2e-55 221.5 715 74.4
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.4e-54 218.8 323 65.0
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.8e-54 218.4 672 78.7
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 3.1e-54 217.6 187 59.9
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 3.1e-54 217.6 289 71.3
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 4.1e-54 217.2 179 60.3
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 5.4e-54 216.9 715 75.5
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.6e-53 215.3 664 79.1
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 1.0e-52 212.6 157 65.6
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 2.3e-52 211.5 745 72.6
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 2.3e-52 211.5 727 70.0
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 3.8e-52 210.7 733 70.9
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.5e-51 208.8 665 79.5
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 3.3e-51 207.6 727 69.9
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.3e-51 207.2 200 57.5
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 4.3e-51 207.2 222 50.5
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 1.2e-50 205.7 192 58.9
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.6e-50 205.3 296 66.6
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 1.6e-50 205.3 696 72.8
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.8e-50 204.5 321 61.7
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.8e-50 204.5 203 52.7
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 4.7e-50 203.8 287 67.6
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 8.0e-50 203.0 701 72.3
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.0e-49 202.6 186 55.4
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.0e-49 202.6 709 73.1
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.4e-49 202.2 353 60.1
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.3e-49 201.4 156 62.2
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 3.0e-49 201.1 648 79.9
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 5.2e-49 200.3 177 59.9
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 5.2e-49 200.3 177 59.9
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 6.8e-49 199.9 177 59.9
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 9.8e-48 196.1 135 71.1
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.7e-47 195.3 285 66.3
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 3.7e-47 194.1 200 53.0
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-46 192.6 656 61.4
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.2e-45 189.1 174 51.1
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.5e-43 182.2 197 50.8
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.4e-41 175.6 181 54.1
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.2e-40 172.6 254 69.7
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.5e-40 172.2 123 65.9
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 5.4e-38 163.7 569 86.1
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 1.6e-37 162.2 109 70.6
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 1.3e-36 159.1 111 70.3
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.5e-35 155.6 104 73.1
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 4.3e-35 154.1 106 69.8
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.1e-33 149.4 111 64.9
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 5.2e-33 147.1 107 65.4
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.0e-32 145.2 111 64.0
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 5.8e-32 143.7 110 63.6
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 1.9e-27 128.6 106 59.4
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 4.3e-27 127.5 110 56.4
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.4e-25 122.5 76 75.0
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.4e-25 122.5 111 54.1
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 7.6e-24 116.7 82 67.1
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 1.3e-20 105.9 110 50.0
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.3e-20 105.9 78 65.4
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 4.3e-19 100.9 95 49.5
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.8e-18 98.2 83 55.4
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 2.2e-15 88.6 87 51.7
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 4.2e-14 84.3 62 58.1
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 2.3e-12 78.6 61 62.3
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.5e-11 75.9 57 63.2
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 3.3e-11 74.7 50 72.0
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 4.0e-09 67.8 45 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 4.0e-09 67.8 153 29.4
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 6.9e-09 67.0 170 28.2
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 9.0e-09 66.6 49 67.3
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 9.0e-09 66.6 147 29.3
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.2e-08 66.2 147 28.6
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.2e-08 66.2 147 27.9
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.4e-08 64.7 149 28.9
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 4.5e-08 64.3 151 28.5
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 5.8e-08 63.9 147 27.9
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 7.6e-08 63.5 147 27.9
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 9.9e-08 63.2 147 27.9
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 1.3e-07 62.8 147 26.5
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.3e-07 62.8 147 28.6
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 1.7e-07 62.4 136 29.4
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.7e-07 62.4 132 30.3
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 2.9e-07 61.6 118 42.4
Ca_26037_v3 Cicer arietinum L. HOM05D004079 ORTHO05D005437 8.4e-07 60.1 93 35.5
Duzib205G1164 Durio zibethinus HOM05D004079 ORTHO05D005437 1.4e-06 59.3 109 34.9
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 1.4e-06 59.3 135 28.9
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 1.4e-06 59.3 111 34.2
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.4e-06 59.3 147 27.9
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 1.9e-06 58.9 132 30.3
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 1.9e-06 58.9 149 26.8
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 1.9e-06 58.9 133 28.6
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 1.9e-06 58.9 79 38.0
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 3.2e-06 58.2 146 30.1
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 4.2e-06 57.8 169 26.6
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 4.2e-06 57.8 150 26.7
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 4.2e-06 57.8 148 27.7
Glyma.06G189500 Glycine max HOM05D004079 ORTHO05D005437 5.4e-06 57.4 84 38.1
Lsat_1_v5_gn_4_106880 Lactuca sativa HOM05D004079 ORTHO05D005437 7.1e-06 57.0 79 39.2
MD05G1026300 Malus domestica HOM05D000424 ORTHO05D000355 7.1e-06 57.0 117 33.3
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 9.3e-06 56.6 132 29.5
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 9.3e-06 56.6 141 23.4


User provided reference genes

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