Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 5.3e-190 667.5 337 100.0
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 7.7e-133 477.6 342 72.2
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.5e-131 473.4 342 72.8
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 9.4e-131 470.7 343 70.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.6e-130 468.8 343 70.8
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.4e-129 466.8 343 71.7
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.3e-129 466.1 349 69.3
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.6e-128 462.6 343 70.8
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 5.7e-128 461.5 344 69.5
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.3e-127 460.3 347 69.2
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.7e-127 458.8 343 69.1
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.4e-126 456.8 341 69.8
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.0e-125 453.0 347 69.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.5e-125 451.8 336 71.4
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.5e-125 451.8 343 70.3
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 5.9e-125 451.4 355 69.6
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 7.7e-125 451.1 342 69.9
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.3e-124 450.3 340 69.7
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 6.5e-124 448.0 342 69.6
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 8.5e-124 447.6 343 70.3
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.1e-123 447.2 342 69.6
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.5e-123 444.9 343 70.0
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.6e-122 443.4 342 67.8
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.6e-122 443.4 343 67.9
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.7e-122 442.6 343 68.2
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.6e-122 442.2 344 70.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.6e-122 442.2 342 68.7
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.1e-122 441.4 344 70.1
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 6.1e-122 441.4 339 68.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.0e-121 440.7 343 69.7
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 3.0e-121 439.1 349 68.2
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 8.8e-121 437.6 346 69.7
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 3.4e-120 435.6 344 68.6
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.1e-118 429.1 343 65.9
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 3.1e-118 429.1 343 66.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.1e-118 427.6 342 67.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.2e-117 427.2 347 65.7
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.6e-117 426.8 343 67.1
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.7e-117 424.5 342 67.5
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 7.7e-117 424.5 343 67.3
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.9e-116 422.5 343 66.8
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 3.8e-116 422.2 347 66.0
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.0e-116 421.8 342 67.3
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.0e-116 421.8 344 67.7
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 8.6e-116 421.0 343 67.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.1e-115 420.6 347 66.0
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.1e-115 420.6 342 64.9
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.9e-115 419.9 344 66.3
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 4.2e-115 418.7 408 57.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 4.2e-115 418.7 413 57.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.2e-114 417.2 344 66.9
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.6e-114 416.8 344 66.3
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.1e-114 416.4 339 64.3
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 3.0e-113 412.5 343 65.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 5.2e-113 411.8 345 65.2
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 6.8e-113 411.4 344 66.6
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 6.8e-113 411.4 342 65.2
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 3.4e-112 409.1 338 64.8
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 4.4e-112 408.7 346 65.6
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 4.9e-111 405.2 343 65.6
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.2e-110 401.0 343 63.8
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.6e-109 400.2 340 63.5
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.0e-109 399.8 344 64.0
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 7.8e-109 397.9 340 65.9
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.3e-108 396.4 342 62.3
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 2.9e-108 396.0 345 61.4
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 4.3e-107 392.1 348 62.9
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 7.3e-107 391.3 342 62.9
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 7.3e-107 391.3 346 61.3
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 9.5e-107 391.0 338 64.2
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 9.5e-107 391.0 346 61.3
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 6.2e-106 388.3 388 57.7
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-105 387.5 345 63.5
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.4e-105 387.1 344 61.6
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.3e-105 386.3 345 62.3
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 5.2e-105 385.2 343 62.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.5e-104 383.6 394 56.9
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 2.0e-104 383.3 340 61.2
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 3.4e-104 382.5 345 61.7
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 5.8e-104 381.7 329 62.6
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 9.8e-104 380.9 345 62.9
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.9e-103 379.4 342 61.7
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 8.3e-103 377.9 341 64.5
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.4e-102 377.1 348 61.2
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.4e-102 376.3 344 60.8
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-100 370.9 347 60.8
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.9e-99 366.7 342 60.2
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.9e-99 366.7 295 68.8
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.5e-99 366.3 345 59.7
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 5.6e-99 365.2 280 68.2
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.2e-98 364.0 342 59.6
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-98 364.0 348 60.1
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.6e-98 363.6 342 59.4
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 3.6e-98 362.5 344 59.9
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.1e-97 360.9 344 59.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 5.2e-97 358.6 357 58.5
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.5e-96 357.1 343 57.7
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.5e-96 357.1 321 62.9
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 4.4e-96 355.5 349 56.4
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 7.5e-96 354.8 344 59.9
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.7e-95 353.6 344 59.0
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.2e-95 353.2 348 57.2
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.9e-95 352.1 345 58.3
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.4e-94 348.6 343 58.3
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.2e-93 347.4 344 58.1
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 7.8e-93 344.7 342 57.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.3e-92 344.0 344 55.8
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-92 343.2 347 56.2
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 3.9e-92 342.4 342 57.9
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 3.9e-92 342.4 338 55.3
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 5.1e-92 342.0 270 68.1
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 6.6e-92 341.7 343 56.6
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 6.6e-92 341.7 356 54.8
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 6.6e-92 341.7 340 55.6
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 7.3e-91 338.2 338 54.1
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.1e-89 334.3 347 55.9
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.1e-89 332.8 340 57.6
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 4.0e-89 332.4 340 57.6
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.5e-88 330.5 340 55.6
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 4.4e-88 328.9 343 57.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 4.4e-88 328.9 343 57.1
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 2.2e-87 326.6 339 55.5
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 2.2e-87 326.6 339 55.5
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 6.4e-87 325.1 339 57.2
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 8.4e-87 324.7 325 57.2
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-86 324.3 326 58.0
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-86 324.3 344 55.2
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.9e-86 323.6 324 56.8
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-86 323.6 326 57.1
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 2.4e-86 323.2 325 56.9
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.2e-85 320.9 340 54.7
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.7e-85 319.7 338 53.8
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.5e-85 319.3 347 54.5
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 3.5e-85 319.3 344 54.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.3e-84 317.4 343 56.0
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.3e-84 317.4 339 53.4
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.3e-84 316.6 247 66.8
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 3.0e-84 316.2 344 54.1
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.4e-81 307.4 341 53.4
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.3e-76 290.0 251 62.9
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.3e-76 290.0 281 59.1
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 7.9e-69 265.0 337 50.4
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 7.6e-64 248.4 339 46.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 8.4e-63 245.0 247 55.1
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.4e-62 244.2 207 66.7
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 8.7e-52 208.4 347 39.2
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 5.3e-41 172.6 338 37.9
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 6.1e-37 159.1 241 43.2
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.1e-35 154.8 406 33.3
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.4e-30 137.9 153 52.3
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-26 124.4 149 49.7
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 8.8e-20 102.1 233 33.9
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 9.1e-17 92.0 150 37.3
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 2.0e-16 90.9 88 55.7
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 3.2e-14 83.6 146 39.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.0e-11 74.3 345 24.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 3.4e-11 73.6 186 31.2
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.3e-10 71.6 178 35.4
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 5.5e-06 56.2 243 25.5
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 7.2e-06 55.8 345 22.3


User provided reference genes

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