Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 9.7e-153 543.5 286 100.0
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 7.0e-151 537.3 287 99.3
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 8.3e-136 487.3 253 92.1
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.1e-135 486.9 251 93.2
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.4e-135 486.5 254 91.7
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.8e-135 486.1 251 93.6
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.8e-135 486.1 263 90.1
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.8e-135 486.1 247 94.3
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 3.1e-135 485.3 254 92.1
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 3.1e-135 485.3 248 93.1
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 5.4e-135 484.6 249 93.2
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 7.0e-135 484.2 254 91.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 9.1e-135 483.8 248 92.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.2e-134 483.4 253 90.9
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.2e-134 483.4 249 92.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.6e-134 483.0 254 92.1
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.0e-134 482.6 254 90.9
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.0e-134 482.6 254 90.9
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.7e-134 482.3 248 92.3
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 3.5e-134 481.9 252 91.7
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 5.9e-134 481.1 247 93.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 5.9e-134 481.1 249 92.4
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.0e-133 480.3 252 92.1
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.0e-133 480.3 254 90.9
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.3e-133 479.9 254 90.9
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-133 479.9 254 90.9
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.8e-133 478.4 250 92.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.8e-133 478.4 250 92.0
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.0e-133 478.0 254 90.6
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 6.5e-133 477.6 253 90.9
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.5e-133 477.6 249 91.6
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 8.5e-133 477.2 275 86.9
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.5e-132 475.7 249 92.8
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 2.5e-132 475.7 248 91.5
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 3.2e-132 475.3 249 91.6
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 3.2e-132 475.3 242 94.2
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.2e-132 475.3 251 88.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 5.5e-132 474.6 248 91.5
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 5.5e-132 474.6 252 90.1
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 7.2e-132 474.2 250 91.2
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 7.2e-132 474.2 254 90.9
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 9.4e-132 473.8 253 89.7
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 9.4e-132 473.8 253 89.7
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 90.0
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 89.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.6e-131 473.0 248 91.5
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.6e-131 473.0 248 91.5
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.6e-131 473.0 254 90.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 90.0
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.1e-131 472.6 252 89.3
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 2.7e-131 472.2 248 91.1
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.7e-131 472.2 246 92.3
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 3.6e-131 471.9 251 88.4
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 4.7e-131 471.5 251 90.0
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 4.7e-131 471.5 251 89.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 4.7e-131 471.5 252 90.5
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 4.7e-131 471.5 251 90.4
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 8.0e-131 470.7 252 88.9
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 8.0e-131 470.7 252 88.9
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.0e-130 470.3 248 90.7
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.4e-130 469.9 252 88.9
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.4e-130 469.9 249 90.4
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.8e-130 469.5 249 89.2
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.8e-130 469.5 249 89.6
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.3e-130 469.2 250 89.2
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 2.3e-130 469.2 250 89.2
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.3e-130 469.2 269 84.8
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.3e-130 469.2 247 91.5
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.0e-130 468.8 247 90.3
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.0e-130 468.8 249 91.2
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 4.0e-130 468.4 249 89.6
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 4.0e-130 468.4 247 89.9
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 4.0e-130 468.4 249 89.2
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 5.2e-130 468.0 249 88.8
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 5.2e-130 468.0 250 89.2
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 8.8e-130 467.2 252 88.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 8.8e-130 467.2 244 92.2
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.2e-129 466.8 247 90.3
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.5e-129 466.5 247 89.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 1.5e-129 466.5 250 88.8
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.5e-129 466.5 246 88.6
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.4e-129 465.3 249 90.0
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 4.4e-129 464.9 246 89.8
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.5e-129 464.2 243 91.8
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.2e-128 462.6 249 89.2
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.7e-128 461.8 254 86.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.7e-128 461.8 249 89.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 4.5e-126 454.9 250 88.4
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.5e-124 449.9 247 88.7
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.4e-121 438.7 350 66.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.4e-121 438.3 250 86.0
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 9.8e-121 437.2 246 85.4
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 3.7e-120 435.3 225 93.8
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.0e-118 429.5 226 92.0
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 7.8e-118 427.6 261 82.0
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 5.0e-117 424.9 250 84.0
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 8.6e-117 424.1 250 81.6
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.9e-116 422.9 239 83.7
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 6.8e-114 414.5 242 82.6
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.9e-108 396.4 249 75.9
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 7.3e-108 394.4 221 86.9
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.6e-99 365.5 189 94.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 8.4e-96 354.4 190 91.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.3e-93 347.1 251 68.5
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-89 333.6 171 94.7
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.8e-88 328.9 171 93.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 4.2e-87 325.5 168 95.2
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.7e-86 322.8 181 89.5
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.4e-82 310.5 162 90.1
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.9e-80 302.8 183 82.5
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.0e-77 294.3 185 77.3
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-75 286.6 164 87.2
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.4e-74 283.1 164 84.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.9e-74 281.6 164 86.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 4.9e-72 275.4 145 93.1
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-69 267.3 176 75.6
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 8.7e-69 264.6 147 87.8
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.7e-69 264.6 213 67.6
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.8e-67 259.6 155 83.9
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.8e-67 258.8 142 85.9
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.8e-66 256.9 156 81.4
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.4e-66 256.5 155 83.2
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.3e-61 240.7 148 81.1
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 3.0e-53 213.0 190 55.8
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 5.1e-53 212.2 141 77.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-52 209.9 151 72.8
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.6e-41 173.3 93 88.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 8.5e-40 168.3 167 58.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.5e-31 141.0 76 92.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 2.0e-28 130.6 129 56.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 2.2e-27 127.1 71 85.9
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.1e-26 122.9 58 89.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.3e-24 117.9 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.6e-17 94.4 55 76.4
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 4.5e-17 92.8 55 74.5
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 2.1e-14 84.0 50 74.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.1e-14 84.0 46 80.4
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 1.2e-06 58.2 85 42.4


User provided reference genes

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