Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.5e-119 431.0 223 100.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.2e-89 333.6 218 76.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-89 332.8 219 76.7
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.5e-89 332.0 219 77.6
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.7e-89 330.9 219 77.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.9e-88 328.9 217 76.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 5.0e-88 328.2 222 73.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.2e-87 325.5 223 72.2
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 9.4e-87 323.9 217 75.1
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.6e-86 323.2 219 73.5
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.1e-86 322.8 214 75.2
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.1e-86 322.8 226 71.7
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.7e-86 321.6 219 74.9
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 6.1e-86 321.2 240 70.0
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 8.0e-86 320.9 214 74.8
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.0e-85 320.5 224 72.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.8e-85 319.7 217 75.1
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.3e-85 319.3 219 72.6
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.3e-85 319.3 222 73.4
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.3e-85 319.3 219 73.1
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 4.0e-85 318.5 221 72.4
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.8e-85 317.8 218 74.3
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 8.8e-85 317.4 219 72.1
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 8.8e-85 317.4 220 74.5
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.5e-84 316.6 219 72.1
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.5e-84 316.6 219 70.8
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.6e-84 315.8 215 73.0
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 3.4e-84 315.5 209 75.1
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.4e-84 315.5 219 70.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.4e-84 315.5 219 72.1
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 7.5e-84 314.3 219 71.2
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.3e-83 313.5 219 71.2
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 3.7e-83 312.0 219 71.7
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 3.7e-83 312.0 219 71.7
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.7e-83 312.0 219 72.1
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.8e-83 311.6 228 71.1
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 6.3e-83 311.2 207 74.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 6.3e-83 311.2 225 71.6
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 6.3e-83 311.2 214 75.2
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 8.3e-83 310.8 221 70.1
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.1e-82 310.5 223 69.5
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-82 310.5 204 74.0
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.8e-82 309.7 219 70.8
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.4e-82 309.3 214 72.4
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.1e-82 308.9 224 67.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 5.4e-82 308.1 210 71.9
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 7.0e-82 307.8 224 67.9
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 9.1e-82 307.4 218 72.0
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 9.1e-82 307.4 219 70.3
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.2e-81 307.0 218 70.2
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.2e-81 307.0 219 72.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.6e-81 306.6 219 70.8
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.0e-81 306.2 220 71.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.0e-81 306.2 219 69.4
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 2.7e-81 305.8 221 70.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 2.7e-81 305.8 224 70.5
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.7e-81 305.8 219 72.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.7e-81 305.8 204 73.0
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 3.5e-81 305.4 220 69.1
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.5e-81 305.1 221 71.0
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 4.5e-81 305.1 219 68.5
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 5.9e-81 304.7 218 69.7
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 5.9e-81 304.7 219 68.9
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 5.9e-81 304.7 224 70.5
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 7.7e-81 304.3 223 71.3
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.0e-80 303.9 219 68.9
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-80 303.9 224 69.6
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.0e-80 303.9 223 68.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.0e-80 303.9 224 67.0
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.3e-80 303.5 224 68.8
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-80 303.5 224 68.8
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.3e-80 303.5 221 69.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.3e-80 303.5 224 70.5
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-80 303.1 224 68.8
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.9e-80 302.4 214 71.0
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.9e-80 302.4 219 68.0
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.9e-80 302.4 220 70.5
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.9e-80 302.4 219 72.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.8e-80 302.0 219 70.3
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.0e-80 301.6 213 71.4
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 5.0e-80 301.6 229 66.4
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 5.0e-80 301.6 221 71.5
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 6.5e-80 301.2 226 69.0
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 8.5e-80 300.8 225 68.4
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 8.5e-80 300.8 221 68.3
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.1e-79 300.4 218 71.6
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 4.2e-79 298.5 221 68.8
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.2e-79 298.5 228 69.7
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.5e-79 298.1 175 85.7
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 5.5e-79 298.1 228 69.7
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 7.2e-79 297.7 276 60.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.2e-78 297.0 233 67.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.6e-78 296.6 228 67.1
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.7e-78 295.8 221 67.4
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.1e-78 294.7 231 65.4
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.8e-77 293.1 219 69.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-77 292.7 203 73.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-77 292.7 203 73.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.8e-77 291.2 214 68.7
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.8e-77 290.8 219 68.5
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.2e-76 290.4 219 67.1
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 2.0e-76 289.7 227 65.6
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.6e-76 289.3 224 63.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.4e-76 288.5 221 67.9
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 5.7e-76 288.1 226 64.2
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.7e-75 286.6 215 67.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.7e-75 285.4 224 65.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.3e-75 284.6 217 64.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.1e-74 283.9 243 61.7
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.4e-74 282.7 213 65.3
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 2.4e-74 282.7 226 64.6
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.0e-73 279.6 218 68.3
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 5.9e-73 278.1 219 63.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 5.9e-73 278.1 219 63.5
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 3.3e-71 272.3 240 61.2
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.7e-70 268.5 312 50.6
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 4.7e-70 268.5 218 66.1
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.4e-69 266.9 170 78.2
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.3e-69 266.2 214 64.0
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.4e-68 262.3 169 77.5
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.2e-67 259.6 226 62.4
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 6.4e-67 258.1 212 64.2
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.9e-64 248.8 163 73.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.6e-64 248.1 223 57.8
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.3e-63 245.4 228 63.2
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.0e-61 238.8 218 56.4
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 5.8e-60 235.0 214 59.8
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 2.9e-59 232.6 219 59.8
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.9e-59 231.9 233 52.8
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.4e-58 229.6 216 56.9
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 8.6e-56 221.1 220 52.7
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.6e-54 216.9 127 80.3
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.6e-54 215.7 175 58.3
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.3e-53 213.0 128 79.7
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.2e-52 210.7 208 56.7
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 4.4e-52 208.8 145 73.1
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 3.2e-50 202.6 174 64.9
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 4.1e-50 202.2 244 45.1
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.7e-49 199.5 162 65.4
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.7e-48 196.8 165 65.5
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.1e-48 195.3 117 77.8
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 9.9e-44 181.0 104 81.7
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.9e-43 179.5 131 68.7
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.7e-40 170.2 219 45.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 6.6e-40 168.3 218 45.0
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.3e-39 165.6 295 37.3
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.4e-37 160.6 170 54.7
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.0e-36 156.8 186 45.7
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 5.8e-36 155.2 178 50.6
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 8.4e-35 151.4 192 50.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.8e-27 125.9 79 75.9
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.9e-27 125.6 128 58.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.0e-24 117.9 85 72.9
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 5.6e-23 112.1 167 40.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 9.6e-23 111.3 100 62.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-22 110.5 151 47.0
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.1e-21 107.8 112 53.6
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.4e-21 107.5 87 63.2
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 5.3e-21 105.5 173 40.5
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.5e-20 104.0 87 62.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.2e-19 100.1 67 74.6
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.2e-19 100.1 59 81.4
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 6.4e-19 98.6 81 60.5
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.9e-18 97.1 64 68.8
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.2e-18 95.9 214 36.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.3e-16 90.1 148 43.2
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 8.7e-16 88.2 87 54.0
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 9.6e-15 84.7 147 38.8
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 5.8e-12 75.5 45 75.6
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.7e-11 73.9 80 56.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 3.8e-11 72.8 63 55.6
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 7.1e-10 68.6 45 66.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.0e-08 64.7 53 62.3
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 1.8e-08 63.9 38 78.9


User provided reference genes

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