Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02296 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.0e-34 147.5 73 100.0
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.5e-20 101.7 55 90.9
Eucgr.E02102 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.3e-20 101.3 55 90.9
Eucgr.E02551 Eucalyptus grandis HOM05D003832 ORTHO05D004365 9.5e-20 99.8 55 90.9
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 9.5e-20 99.8 55 89.1
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.6e-19 99.0 55 89.1
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.6e-19 99.0 55 89.1
Eucgr.E02530 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.0e-18 94.4 51 90.2
Eucgr.E02142 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.5e-17 92.4 55 85.5
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 4.4e-17 90.9 55 76.4
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 4.4e-17 90.9 55 76.4
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 4.4e-17 90.9 55 76.4
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 4.4e-17 90.9 55 76.4
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 5.7e-17 90.5 55 76.4
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 7.5e-17 90.1 55 76.4
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 7.5e-17 90.1 55 76.4
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 1.7e-16 89.0 55 76.4
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 1.7e-16 89.0 55 74.5
Eucgr.E02248 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.2e-16 88.6 51 82.4
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 2.2e-16 88.6 55 74.5
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 3.7e-16 87.8 55 72.7
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 3.7e-16 87.8 55 72.7
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 3.7e-16 87.8 55 72.7
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 3.7e-16 87.8 55 74.5
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 4.9e-16 87.4 55 70.9
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 8.3e-16 86.7 55 72.7
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 8.3e-16 86.7 55 72.7
Eucgr.E02175 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.3e-16 86.7 51 88.2
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.3e-16 86.7 48 87.5
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 8.3e-16 86.7 55 70.9
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 8.3e-16 86.7 55 74.5
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 2.4e-15 85.1 55 72.7
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 2.4e-15 85.1 55 70.9
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 3.2e-15 84.7 55 70.9
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 3.2e-15 84.7 55 74.5
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 4.1e-15 84.3 55 69.1
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 4.1e-15 84.3 55 69.1
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 5.4e-15 84.0 55 67.3
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 5.4e-15 84.0 55 72.7
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 5.4e-15 84.0 55 70.9
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 7.0e-15 83.6 55 70.9
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 7.0e-15 83.6 55 70.9
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 7.0e-15 83.6 55 70.9
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 7.0e-15 83.6 55 70.9
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 9.2e-15 83.2 55 69.1
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 9.2e-15 83.2 55 69.1
TAR626G0116 Trochodendron aralioides HOM05D003832 ORTHO05D004365 9.2e-15 83.2 55 70.9
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 1.2e-14 82.8 55 67.3
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 1.2e-14 82.8 55 67.3
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 1.2e-14 82.8 55 69.1
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 1.2e-14 82.8 55 69.1
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 1.6e-14 82.4 55 67.3
Haze_22022 Corylus avellana HOM05D003832 ORTHO05D004365 1.6e-14 82.4 55 70.9
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 1.6e-14 82.4 55 69.1
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 2.0e-14 82.0 55 67.3
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 2.0e-14 82.0 55 70.9
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 2.7e-14 81.6 55 72.7
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 2.7e-14 81.6 55 65.5
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 2.7e-14 81.6 55 65.5
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 2.7e-14 81.6 55 65.5
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.7e-14 81.6 55 67.3
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 2.7e-14 81.6 64 60.9
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 3.5e-14 81.3 55 70.9
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 4.6e-14 80.9 56 69.6
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 4.6e-14 80.9 55 69.1
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 4.6e-14 80.9 55 69.1
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 4.6e-14 80.9 55 67.3
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 5.9e-14 80.5 55 65.5
arahy.Tifrunner.gnm1.ann1.SNS3QW Arachis hypogaea HOM05D003832 ORTHO05D004365 5.9e-14 80.5 51 72.5
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 5.9e-14 80.5 54 66.7
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 5.9e-14 80.5 55 67.3
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 5.9e-14 80.5 55 70.9
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.9e-14 80.5 55 70.9
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 5.9e-14 80.5 55 70.9
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 5.9e-14 80.5 54 66.7
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 5.9e-14 80.5 54 66.7
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 7.8e-14 80.1 55 65.5
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 7.8e-14 80.1 55 65.5
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 7.8e-14 80.1 55 63.6
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 7.8e-14 80.1 55 65.5
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 7.8e-14 80.1 55 69.1
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 7.8e-14 80.1 55 67.3
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 1.0e-13 79.7 55 67.3
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 1.0e-13 79.7 55 67.3
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 1.0e-13 79.7 55 61.8
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 1.0e-13 79.7 55 67.3
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 1.0e-13 79.7 55 65.5
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 1.3e-13 79.3 55 65.5
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 1.3e-13 79.3 54 66.7
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 1.3e-13 79.3 55 67.3
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 1.7e-13 79.0 55 65.5
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 1.7e-13 79.0 55 63.6
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 1.7e-13 79.0 55 63.6
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 1.7e-13 79.0 55 65.5
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 1.7e-13 79.0 55 67.3
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 1.7e-13 79.0 55 63.6
BcaB07g33785 Brassica carinata HOM05D003832 ORTHO05D004365 2.9e-13 78.2 55 63.6
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 2.9e-13 78.2 55 63.6
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 2.9e-13 78.2 55 65.5
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 2.9e-13 78.2 55 67.3
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 3.9e-13 77.8 55 69.1
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 3.9e-13 77.8 55 69.1
Gohir.A04G090600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 3.9e-13 77.8 51 72.5
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 3.9e-13 77.8 54 64.8
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 5.0e-13 77.4 55 61.8
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 5.0e-13 77.4 52 65.4
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 5.0e-13 77.4 55 65.5
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 5.0e-13 77.4 55 67.3
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 5.0e-13 77.4 55 67.3
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 6.6e-13 77.0 56 64.3
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 6.6e-13 77.0 55 61.8
BcaC06g35194 Brassica carinata HOM05D003832 ORTHO05D004365 6.6e-13 77.0 55 61.8
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 6.6e-13 77.0 55 67.3
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 8.6e-13 76.6 55 63.6
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 1.5e-12 75.9 55 61.8
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 1.5e-12 75.9 55 61.8
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 1.5e-12 75.9 55 63.6
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.9e-12 75.5 55 61.8
BolC9t57639H Brassica oleracea HOM05D003832 ORTHO05D004365 1.9e-12 75.5 55 60.0
Cc02_g28290 Coffea canephora HOM05D003832 ORTHO05D004365 1.9e-12 75.5 51 66.7
FAN08G2334 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.9e-12 75.5 55 65.5
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 1.9e-12 75.5 55 67.3
A05p26850 Brassica napus HOM05D003832 ORTHO05D004365 2.5e-12 75.1 69 55.1
A07p42340 Brassica napus HOM05D003832 ORTHO05D004365 2.5e-12 75.1 69 55.1
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 3.3e-12 74.7 55 63.6
Cc02_g28310 Coffea canephora HOM05D003832 ORTHO05D004365 4.3e-12 74.3 55 60.0
Eucgr.E02600 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.3e-12 74.3 51 74.5
FAN22G0067 Fragaria x ananassa HOM05D003832 ORTHO05D004365 4.3e-12 74.3 51 70.6
C09p47960 Brassica napus HOM05D003832 ORTHO05D004365 1.6e-11 72.4 51 62.7
BraA05t21564Z Brassica rapa HOM05D003832 ORTHO05D004365 1.6e-11 72.4 51 62.7
Eucgr.E02304 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.6e-11 72.4 46 78.3
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 1.6e-11 72.4 54 59.3
Aqoxy3G00356 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 2.1e-11 72.0 55 58.2
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 2.1e-11 72.0 47 68.1
BolC7t42388H Brassica oleracea HOM05D003832 ORTHO05D004365 2.8e-11 71.6 55 56.4
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 2.8e-11 71.6 55 60.0
CSS0017606 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 3.6e-11 71.2 48 66.7
CSS0037914 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 3.6e-11 71.2 48 66.7
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 3.6e-11 71.2 55 58.2
CDE07G0789 Ceratophyllum demersum HOM05D001368 ORTHO05D003846 6.1e-11 70.5 51 62.7
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 1.8e-10 68.9 47 66.0
Ah.01g001730 Amaranthus hybridus HOM05D003832 ORTHO05D004365 2.3e-10 68.6 50 60.0
SEGI_25137 Sequoiadendron giganteum HOM05D003832 ORTHO05D004365 2.3e-10 68.6 55 60.0
BraA05t20080Z Brassica rapa HOM05D003832 ORTHO05D004365 5.2e-10 67.4 51 60.8
C07p18790 Brassica napus HOM05D003832 ORTHO05D004365 6.8e-10 67.0 51 56.9
CBR_g19929 Chara braunii HOM05D003832 ORTHO05D004365 2.6e-09 65.1 55 52.7
Mapoly0047s0093 Marchantia polymorpha HOM05D003832 ORTHO05D004365 3.4e-09 64.7 60 51.7
PSO832G0096 Papaver somniferum HOM05D003832 ORTHO05D004365 7.5e-09 63.5 51 58.8
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 1.3e-08 62.8 55 52.7
EL10Ac4g09380 Beta vulgaris HOM05D003832 ORTHO05D004365 2.9e-08 61.6 49 55.1
EL10Ac4g09383 Beta vulgaris HOM05D003832 ORTHO05D004365 2.9e-08 61.6 49 55.1
Os03g0321900 Oryza sativa ssp. japonica HOM05D003832 ORTHO05D004365 4.9e-08 60.8 48 56.2
Pp3c14_6040 Physcomitrium patens HOM05D003832 ORTHO05D004365 1.1e-07 59.7 57 49.1
Eucgr.E02240 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.6e-06 54.3 35 74.3


User provided reference genes

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