Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02248 Eucalyptus grandis HOM05D003832 ORTHO05D004365 7.1e-50 200.3 101 100.0
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.8e-24 113.6 119 52.9
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.7e-23 110.9 115 53.0
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 7.4e-23 110.5 115 53.0
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 6.5e-19 97.4 71 63.4
Eucgr.E02551 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.1e-18 96.7 55 83.6
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 1.4e-18 96.3 83 55.4
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.9e-18 95.9 54 83.3
Eucgr.E02102 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.2e-18 95.1 54 83.3
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.2e-18 95.1 111 48.6
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 3.2e-18 95.1 54 79.6
Eucgr.E02304 Eucalyptus grandis HOM05D003832 ORTHO05D004365 7.2e-18 94.0 56 82.1
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 7.2e-18 94.0 54 79.6
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 2.7e-17 92.0 54 74.1
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 4.7e-17 91.3 54 75.9
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 6.1e-17 90.9 54 74.1
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 6.1e-17 90.9 54 74.1
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 7.9e-17 90.5 54 75.9
Eucgr.E02600 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.4e-16 89.7 62 74.2
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 1.4e-16 89.7 54 74.1
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 1.8e-16 89.4 54 72.2
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 1.8e-16 89.4 54 74.1
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 1.8e-16 89.4 54 74.1
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 2.3e-16 89.0 54 74.1
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 2.3e-16 89.0 55 72.7
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 72.2
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 75.9
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 74.1
Eucgr.E02142 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 79.6
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 74.1
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 74.1
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 3.0e-16 88.6 54 75.9
Eucgr.E02296 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.9e-16 88.2 51 82.4
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 5.1e-16 87.8 54 72.2
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 5.1e-16 87.8 54 72.2
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 5.1e-16 87.8 54 72.2
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 5.1e-16 87.8 54 72.2
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 6.7e-16 87.4 107 43.9
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 6.7e-16 87.4 54 72.2
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 6.7e-16 87.4 54 74.1
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 8.8e-16 87.0 54 70.4
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 8.8e-16 87.0 54 70.4
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 8.8e-16 87.0 54 72.2
TAR626G0116 Trochodendron aralioides HOM05D003832 ORTHO05D004365 8.8e-16 87.0 55 70.9
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 8.8e-16 87.0 54 70.4
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 1.1e-15 86.7 54 74.1
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.1e-15 86.7 54 70.4
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 1.1e-15 86.7 54 72.2
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 1.5e-15 86.3 54 72.2
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 2.6e-15 85.5 54 70.4
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.6e-15 85.5 54 70.4
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 3.3e-15 85.1 55 74.5
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 3.3e-15 85.1 69 60.9
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 3.3e-15 85.1 54 68.5
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 3.3e-15 85.1 54 70.4
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 4.4e-15 84.7 54 72.2
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 4.4e-15 84.7 54 72.2
Eucgr.E02530 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.7e-15 84.3 48 81.2
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 5.7e-15 84.3 54 72.2
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 5.7e-15 84.3 54 70.4
Haze_22022 Corylus avellana HOM05D003832 ORTHO05D004365 7.4e-15 84.0 60 66.7
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 7.4e-15 84.0 112 42.9
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 7.4e-15 84.0 54 70.4
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 9.7e-15 83.6 54 70.4
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 9.7e-15 83.6 54 70.4
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 9.7e-15 83.6 54 68.5
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 9.7e-15 83.6 54 72.2
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 9.7e-15 83.6 54 68.5
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.3e-14 83.2 54 72.2
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 1.3e-14 83.2 54 70.4
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 1.3e-14 83.2 54 68.5
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 1.7e-14 82.8 54 66.7
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 2.2e-14 82.4 54 68.5
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 2.2e-14 82.4 54 66.7
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 2.2e-14 82.4 54 66.7
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 2.8e-14 82.0 54 70.4
FAN08G2334 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.8e-14 82.0 64 60.9
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.8e-14 82.0 54 70.4
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 3.7e-14 81.6 54 68.5
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 4.8e-14 81.3 58 65.5
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 6.3e-14 80.9 54 70.4
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 6.3e-14 80.9 54 70.4
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 6.3e-14 80.9 54 64.8
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 6.3e-14 80.9 54 66.7
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 6.3e-14 80.9 53 67.9
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 6.3e-14 80.9 54 70.4
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 8.2e-14 80.5 54 68.5
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 8.2e-14 80.5 54 68.5
Eucgr.E02175 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.1e-13 80.1 48 81.2
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 1.1e-13 80.1 54 66.7
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 1.4e-13 79.7 54 64.8
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 1.4e-13 79.7 54 64.8
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 1.4e-13 79.7 54 64.8
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.4e-13 79.7 54 66.7
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 1.8e-13 79.3 54 64.8
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.8e-13 79.3 54 66.7
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 1.8e-13 79.3 54 64.8
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 2.4e-13 79.0 55 65.5
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 2.4e-13 79.0 54 64.8
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 2.4e-13 79.0 54 68.5
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 3.1e-13 78.6 54 64.8
arahy.Tifrunner.gnm1.ann1.SNS3QW Arachis hypogaea HOM05D003832 ORTHO05D004365 3.1e-13 78.6 48 70.8
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 3.1e-13 78.6 54 66.7
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 4.1e-13 78.2 54 64.8
Cc02_g28310 Coffea canephora HOM05D003832 ORTHO05D004365 4.1e-13 78.2 53 64.2
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 4.1e-13 78.2 54 68.5
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 4.1e-13 78.2 54 68.5
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 4.1e-13 78.2 54 70.4
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 5.3e-13 77.8 54 63.0
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 5.3e-13 77.8 54 61.1
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 9.1e-13 77.0 54 63.0
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 9.1e-13 77.0 54 63.0
Aqoxy3G00356 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 9.1e-13 77.0 75 49.3
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 9.1e-13 77.0 54 63.0
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 9.1e-13 77.0 53 64.2
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 9.1e-13 77.0 54 64.8
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.2e-12 76.6 54 61.1
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 1.2e-12 76.6 54 63.0
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 1.2e-12 76.6 54 63.0
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 1.2e-12 76.6 54 63.0
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 1.2e-12 76.6 54 63.0
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 1.2e-12 76.6 53 66.0
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 1.6e-12 76.3 54 63.0
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 1.6e-12 76.3 54 64.8
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 2.0e-12 75.9 54 63.0
CSS0017606 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 2.6e-12 75.5 48 70.8
CSS0037914 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 2.6e-12 75.5 48 70.8
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 3.5e-12 75.1 54 61.1
BcaB07g33785 Brassica carinata HOM05D003832 ORTHO05D004365 7.7e-12 73.9 54 61.1
BcaC06g35194 Brassica carinata HOM05D003832 ORTHO05D004365 1.0e-11 73.6 54 59.3
BolC9t57639H Brassica oleracea HOM05D003832 ORTHO05D004365 1.0e-11 73.6 62 51.6
Cc02_g28290 Coffea canephora HOM05D003832 ORTHO05D004365 1.0e-11 73.6 48 66.7
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 1.0e-11 73.6 54 61.1
SEGI_25137 Sequoiadendron giganteum HOM05D003832 ORTHO05D004365 3.8e-11 71.6 54 61.1
Gohir.A04G090600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 5.0e-11 71.2 48 68.8
FAN22G0067 Fragaria x ananassa HOM05D003832 ORTHO05D004365 6.5e-11 70.9 48 68.8
CBR_g19929 Chara braunii HOM05D003832 ORTHO05D004365 1.5e-10 69.7 54 55.6
BolC7t42388H Brassica oleracea HOM05D003832 ORTHO05D004365 1.9e-10 69.3 54 55.6
Eucgr.E02942 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.5e-10 68.9 79 51.9
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 3.2e-10 68.6 54 57.4
CDE07G0789 Ceratophyllum demersum HOM05D001368 ORTHO05D003846 4.2e-10 68.2 48 60.4
Mapoly0047s0093 Marchantia polymorpha HOM05D003832 ORTHO05D004365 5.5e-10 67.8 59 52.5
Os03g0321900 Oryza sativa ssp. japonica HOM05D003832 ORTHO05D004365 1.2e-09 66.6 49 59.2
Eucgr.E02240 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.6e-09 66.2 39 82.1
Pp3c14_6040 Physcomitrium patens HOM05D003832 ORTHO05D004365 1.0e-08 63.5 56 55.4
C09p47960 Brassica napus HOM05D003832 ORTHO05D004365 1.4e-08 63.2 49 55.1
Ah.01g001730 Amaranthus hybridus HOM05D003832 ORTHO05D004365 1.8e-08 62.8 48 56.2
A05p26850 Brassica napus HOM05D003832 ORTHO05D004365 4.0e-08 61.6 56 48.2
A07p42340 Brassica napus HOM05D003832 ORTHO05D004365 4.0e-08 61.6 56 48.2
PSO832G0096 Papaver somniferum HOM05D003832 ORTHO05D004365 4.0e-08 61.6 48 58.3
BraA05t21564Z Brassica rapa HOM05D003832 ORTHO05D004365 5.2e-08 61.2 47 55.3
EL10Ac4g09380 Beta vulgaris HOM05D003832 ORTHO05D004365 8.8e-08 60.5 46 56.5
EL10Ac4g09383 Beta vulgaris HOM05D003832 ORTHO05D004365 8.8e-08 60.5 46 56.5
Eucgr.E02291 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.5e-07 59.7 37 78.4
C07p18790 Brassica napus HOM05D003832 ORTHO05D004365 2.6e-07 58.9 49 51.0
SGA_v2.0_scaffold14G07081 Striga asiatica HOM05D003832 ORTHO05D004365 7.5e-07 57.4 46 54.3
BraA05t20080Z Brassica rapa HOM05D003832 ORTHO05D004365 1.7e-06 56.2 47 53.2
Eucgr.E02147 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.2e-06 55.8 58 55.2
MCO05G158 Micromonas commoda HOM05D003832 ORTHO05D004365 8.2e-06 53.9 53 54.7


User provided reference genes

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