Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.9e-29 131.0 113 100.0
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 1.9e-19 99.4 90 62.2
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 9.5e-19 97.1 89 68.5
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.6e-18 95.1 90 71.1
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 5.2e-17 91.3 113 69.0
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 1.2e-16 90.1 89 77.5
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 1.5e-16 89.7 97 63.9
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 5.8e-16 87.8 90 54.4
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 7.5e-16 87.4 89 71.9
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 6.4e-15 84.3 92 57.6
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 8.3e-15 84.0 90 68.9
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 1.1e-14 83.6 88 83.0
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 1.9e-14 82.8 90 60.0
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 3.2e-14 82.0 88 69.3
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 3.2e-14 82.0 86 67.4
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 7.0e-14 80.9 68 82.4
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.2e-13 80.1 81 66.7
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 1.6e-13 79.7 89 67.4
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.6e-13 79.7 94 69.1
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 1.6e-13 79.7 94 69.1
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 2.0e-13 79.3 94 74.5
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 2.7e-13 79.0 94 77.7
Ciclev10002747m.g Citrus clementina HOM05D002879 ORTHO05D002930 4.6e-13 78.2 90 72.2
Dinv25878 Davidia involucrata HOM05D002879 ORTHO05D002930 6.0e-13 77.8 89 78.7
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 7.8e-13 77.4 90 75.6
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 7.8e-13 77.4 88 68.2
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 1.7e-12 76.3 90 56.7
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 3.9e-12 75.1 95 71.6
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 3.9e-12 75.1 92 65.2
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.9e-12 75.1 76 71.1
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 3.9e-12 75.1 85 62.4
Eucgr.E02069 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.6e-12 73.9 81 64.2
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.6e-12 73.9 81 63.0
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 1.1e-11 73.6 90 75.6
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 1.1e-11 73.6 92 65.2
QL02p029925 Quercus lobata HOM05D002879 ORTHO05D002930 1.1e-11 73.6 63 76.2
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 1.5e-11 73.2 91 74.7
arahy.Tifrunner.gnm1.ann1.MR10IA Arachis hypogaea HOM05D002879 ORTHO05D002930 1.5e-11 73.2 91 75.8
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.5e-11 73.2 94 66.0
Eucgr.E02065 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.5e-11 72.4 81 63.0
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 2.5e-11 72.4 68 76.5
Eucgr.E02070 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.3e-11 72.0 81 63.0
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 3.3e-11 72.0 87 60.9
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 3.3e-11 72.0 90 62.2
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.3e-11 72.0 96 58.3
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.3e-11 71.6 95 47.4
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.3e-11 71.6 97 58.8
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 5.6e-11 71.2 89 64.0
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 5.6e-11 71.2 89 60.7
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 7.3e-11 70.9 90 62.2
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 1.2e-10 70.1 92 72.8
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 1.6e-10 69.7 92 62.0
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.1e-10 69.3 90 72.2
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 2.1e-10 69.3 92 72.8
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 2.1e-10 69.3 92 72.8
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 2.8e-10 68.9 89 74.2
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 2.8e-10 68.9 94 75.5
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.6e-10 68.6 93 65.6
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 4.7e-10 68.2 89 71.9
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.7e-10 68.2 67 67.2
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 4.7e-10 68.2 86 66.3
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.2e-10 67.8 80 68.8
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 6.2e-10 67.8 79 68.4
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.2e-10 67.8 97 59.8
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.2e-10 67.8 97 59.8
Eucgr.E02064 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.1e-10 67.4 91 60.4
ATR0820G076 Amborella trichopoda HOM05D002879 ORTHO05D002930 1.8e-09 66.2 95 68.4
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.8e-09 66.2 58 58.6
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.8e-09 66.2 58 58.6
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.8e-09 66.2 58 58.6
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 1.8e-09 66.2 90 44.4
FAN15G0525 Fragaria x ananassa HOM05D002879 ORTHO05D002930 2.3e-09 65.9 92 71.7
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 3.1e-09 65.5 89 60.7
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 3.1e-09 65.5 89 60.7
Cc10_g14960 Coffea canephora HOM05D002879 ORTHO05D002930 3.1e-09 65.5 95 72.6
TAR381G1351 Trochodendron aralioides HOM05D002879 ORTHO05D002930 4.0e-09 65.1 89 74.2
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.0e-09 65.1 97 61.9
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 6.8e-09 64.3 53 62.3
Ciclev10002749m.g Citrus clementina HOM05D002879 ORTHO05D002930 6.8e-09 64.3 90 70.0
Sopen04g027610 Solanum pennellii HOM05D002879 ORTHO05D002930 6.8e-09 64.3 89 74.2
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 8.9e-09 63.9 84 65.5
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 8.9e-09 63.9 69 56.5
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 8.9e-09 63.9 48 64.6
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 8.9e-09 63.9 48 64.6
COL.COLO4_29858 Corchorus olitorius HOM05D002879 ORTHO05D002930 1.2e-08 63.5 97 69.1
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 1.2e-08 63.5 49 85.7
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 1.2e-08 63.5 49 85.7
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.2e-08 63.5 93 59.1
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 1.2e-08 63.5 89 58.4
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.5e-08 63.2 48 81.2
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 2.6e-08 62.4 94 60.6
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 2.6e-08 62.4 88 58.0
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 3.4e-08 62.0 82 65.9
Cc10_g14940 Coffea canephora HOM05D002879 ORTHO05D002930 3.4e-08 62.0 97 69.1
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 3.4e-08 62.0 80 65.0
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.4e-08 62.0 96 53.1
MELO3C025026.2 Cucumis melo HOM05D002879 ORTHO05D002930 4.4e-08 61.6 88 53.4
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.4e-08 61.6 78 56.4
MSTRG.25309 Avicennia marina HOM05D002879 ORTHO05D002930 5.8e-08 61.2 66 63.6
Eucgr.E02061 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.8e-08 61.2 61 75.4
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.8e-08 61.2 97 49.5
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 5.8e-08 61.2 90 60.0
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 7.5e-08 60.8 67 47.8
Glyma.16G166600 Glycine max HOM05D002879 ORTHO05D002930 7.5e-08 60.8 95 61.1
PGR044G2207 Punica granatum HOM05D002879 ORTHO05D002930 7.5e-08 60.8 89 69.7
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 7.5e-08 60.8 86 61.6
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.9e-08 60.5 49 63.3
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 9.9e-08 60.5 86 73.3
Manes.18G093201 Manihot esculenta HOM05D002879 ORTHO05D002930 1.3e-07 60.1 95 66.3
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 1.7e-07 59.7 89 59.6
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 2.2e-07 59.3 85 63.5
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.2e-07 59.3 89 71.9
Eucgr.D00723 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.2e-07 59.3 90 67.8
Eucgr.L02884 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.2e-07 59.3 81 56.8
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 2.2e-07 59.3 49 57.1
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 2.9e-07 58.9 49 83.7
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 4.9e-07 58.2 90 43.3
PGR042G1359 Punica granatum HOM05D002879 ORTHO05D002930 4.9e-07 58.2 60 46.7
AUR62040592 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.4e-07 57.8 89 74.2
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 6.4e-07 57.8 50 56.0
Prupe.8G034200 Prunus persica HOM05D002879 ORTHO05D002930 6.4e-07 57.8 68 69.1
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 8.3e-07 57.4 89 58.4
Eucgr.E02066 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.3e-07 57.4 81 55.6
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 8.3e-07 57.4 67 43.3
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 8.3e-07 57.4 75 57.3
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 1.1e-06 57.0 74 44.6
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.1e-06 57.0 92 60.9
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 1.4e-06 56.6 89 56.2
Oeu046050.1 Olea europaea HOM05D002879 ORTHO05D002930 1.4e-06 56.6 68 70.6
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 1.9e-06 56.2 71 42.3
Rhsim13G0015600 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.9e-06 56.2 75 78.7
MD05G1028100 Malus domestica HOM05D002879 ORTHO05D002930 2.4e-06 55.8 49 77.6
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 3.2e-06 55.5 102 61.8
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.1e-06 55.1 90 55.6
MELO3C025025.2 Cucumis melo HOM05D035606 ORTHO05D002930 4.1e-06 55.1 89 68.5
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.1e-06 55.1 44 61.4
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 4.1e-06 55.1 92 53.3
Lalb_Chr19g0130221 Lupinus albus HOM05D002879 ORTHO05D002930 5.4e-06 54.7 89 69.7
RcHm_v2.0_Chr6g0274981 Rosa chinensis HOM05D002879 ORTHO05D002930 5.4e-06 54.7 90 67.8
Ah.05g168030 Amaranthus hybridus HOM05D002879 ORTHO05D002930 7.1e-06 54.3 29 82.8
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 7.1e-06 54.3 71 60.6
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 7.1e-06 54.3 49 59.2
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 7.1e-06 54.3 89 57.3
Medtr0583s0010 Medicago truncatula HOM05D002879 ORTHO05D002930 9.2e-06 53.9 49 75.5
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 9.2e-06 53.9 81 61.7
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 9.2e-06 53.9 54 53.7


User provided reference genes

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