Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 8.5e-26 119.8 70 100.0
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.1e-24 115.2 71 87.3
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.0e-18 96.3 68 67.6
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.0e-18 96.3 49 91.8
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.0e-18 96.3 50 90.0
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.3e-18 95.9 49 87.8
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 8.5e-18 93.2 52 80.8
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.4e-17 92.4 50 86.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.9e-17 92.0 50 86.0
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.9e-17 92.0 50 84.0
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 1.9e-17 92.0 50 84.0
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 2.5e-17 91.7 50 80.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 3.2e-17 91.3 52 78.8
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 3.2e-17 91.3 49 83.7
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.2e-17 91.3 49 83.7
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 4.2e-17 90.9 52 78.8
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 4.2e-17 90.9 48 87.5
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 4.2e-17 90.9 51 76.5
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 5.5e-17 90.5 49 79.6
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 5.5e-17 90.5 50 80.0
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 83.7
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 83.7
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 83.7
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 79.6
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 81.6
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 81.6
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 7.2e-17 90.1 50 84.0
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 7.2e-17 90.1 49 81.6
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 9.4e-17 89.7 49 83.7
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 9.4e-17 89.7 49 83.7
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 9.4e-17 89.7 49 79.6
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.6e-16 89.0 49 81.6
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 1.6e-16 89.0 50 82.0
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.6e-16 89.0 52 76.9
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.6e-16 89.0 49 79.6
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 81.6
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 81.6
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 81.6
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 81.6
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 81.6
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 81.6
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 2.1e-16 88.6 49 79.6
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 2.7e-16 88.2 49 81.6
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 2.7e-16 88.2 49 81.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 2.7e-16 88.2 50 78.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 2.7e-16 88.2 50 78.0
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 3.6e-16 87.8 48 79.2
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 3.6e-16 87.8 52 76.9
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 4.7e-16 87.4 49 79.6
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 8.0e-16 86.7 50 78.0
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 8.0e-16 86.7 65 63.1
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.0e-15 86.3 50 76.0
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.0e-15 86.3 49 77.6
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.0e-15 86.3 52 76.9
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 1.8e-15 85.5 46 82.6
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.8e-15 85.5 49 77.6
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 3.0e-15 84.7 65 61.5
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 3.0e-15 84.7 47 80.9
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 3.9e-15 84.3 48 77.1
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 5.2e-15 84.0 49 77.6
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 1.5e-14 82.4 50 74.0
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 3.3e-14 81.3 49 77.6
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 1.3e-13 79.3 49 75.5
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.7e-13 79.0 49 75.5
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.2e-13 78.6 47 70.2
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.2e-13 78.6 47 70.2
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.2e-13 78.6 47 70.2
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 2.2e-13 78.6 49 75.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 6.3e-13 77.0 50 70.0
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 2.4e-12 75.1 40 80.0
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 3.1e-12 74.7 52 63.5
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 4.1e-12 74.3 49 75.5
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 5.3e-12 73.9 50 64.0
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 4.5e-11 70.9 52 55.8
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 5.9e-11 70.5 51 64.7
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.0e-10 69.7 45 66.7
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.0e-10 69.7 48 64.6
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.0e-10 69.7 51 64.7
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.0e-10 69.7 51 62.7
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 9.4e-09 63.2 51 58.8
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 2.7e-08 61.6 50 56.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 3.0e-07 58.2 48 62.5
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 3.0e-07 58.2 48 62.5
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 3.0e-07 58.2 47 66.0
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 5.2e-07 57.4 48 62.5
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 1.2e-06 56.2 49 55.1
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 2.0e-06 55.5 49 59.2
Nn2g11514 Nelumbo nucifera HOM05D009309 ORTHO05D011491 2.0e-06 55.5 45 64.4
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 2.6e-06 55.1 48 52.1
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 5.7e-06 53.9 49 51.0
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 9.7e-06 53.1 49 53.1


User provided reference genes

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