Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.4e-33 144.4 74 100.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-20 102.1 60 85.0
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-20 102.1 60 85.0
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.6e-20 99.8 58 84.5
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.1e-18 94.7 60 78.3
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.9e-18 93.6 60 78.3
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 6.9e-18 93.6 60 76.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 9.0e-18 93.2 60 76.7
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.2e-17 92.8 60 75.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.2e-17 92.8 60 76.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.5e-17 92.4 58 77.6
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.5e-17 92.4 60 75.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.0e-17 92.0 57 78.9
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.0e-17 92.0 56 82.1
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.4e-17 91.3 58 77.6
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 3.4e-17 91.3 58 75.9
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.4e-17 91.3 56 80.4
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 3.4e-17 91.3 60 73.3
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.5e-17 90.9 60 80.0
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.8e-17 90.5 61 75.4
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 5.8e-17 90.5 60 73.3
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.8e-17 90.5 60 73.3
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 5.8e-17 90.5 56 78.6
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 5.8e-17 90.5 60 73.3
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.8e-17 90.5 57 75.4
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 9.9e-17 89.7 53 84.9
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 9.9e-17 89.7 60 73.3
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.3e-16 89.4 59 78.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.3e-16 89.4 57 77.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.3e-16 89.4 57 77.2
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.3e-16 89.4 60 73.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-16 89.0 56 80.4
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.7e-16 89.0 57 77.2
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.7e-16 89.0 60 71.7
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.7e-16 89.0 60 71.7
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.7e-16 89.0 60 71.7
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.7e-16 89.0 57 77.2
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.7e-16 89.0 56 78.6
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.2e-16 88.6 60 76.7
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.2e-16 88.6 62 74.2
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.2e-16 88.6 61 77.0
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.2e-16 88.6 57 73.7
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.9e-16 88.2 56 76.8
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.9e-16 88.2 53 79.2
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.9e-16 88.2 61 73.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.9e-16 88.2 60 71.7
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.9e-16 88.2 57 75.4
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 3.8e-16 87.8 53 79.2
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 3.8e-16 87.8 57 73.7
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.8e-16 87.8 59 76.3
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.8e-16 87.8 58 72.4
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.9e-16 87.4 53 79.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.9e-16 87.4 53 79.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 6.4e-16 87.0 60 75.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.4e-16 87.0 57 75.4
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 6.4e-16 87.0 59 72.9
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 8.4e-16 86.7 53 79.2
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 8.4e-16 86.7 56 75.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 8.4e-16 86.7 53 79.2
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 8.4e-16 86.7 57 75.4
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.1e-15 86.3 53 77.4
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.1e-15 86.3 58 74.1
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.1e-15 86.3 56 73.2
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.1e-15 86.3 52 80.8
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.1e-15 86.3 51 82.4
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-15 86.3 57 71.9
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.1e-15 86.3 61 70.5
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-15 86.3 60 71.7
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.4e-15 85.9 53 75.5
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.4e-15 85.9 53 77.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.4e-15 85.9 56 75.0
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.4e-15 85.9 60 73.3
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-15 85.5 53 75.5
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-15 85.5 53 75.5
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-15 85.5 53 75.5
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.9e-15 85.5 56 75.0
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.4e-15 85.1 56 73.2
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.4e-15 85.1 58 72.4
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.4e-15 85.1 58 70.7
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 3.2e-15 84.7 53 75.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.2e-15 84.7 53 75.5
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.2e-15 84.3 61 72.1
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 4.2e-15 84.3 60 68.3
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 4.2e-15 84.3 58 72.4
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 4.2e-15 84.3 53 75.5
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.2e-15 84.3 56 78.6
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 5.4e-15 84.0 53 75.5
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.4e-15 84.0 56 71.4
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 7.1e-15 83.6 53 77.4
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 7.1e-15 83.6 58 70.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 7.1e-15 83.6 56 73.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.3e-15 83.2 53 75.5
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.2e-14 82.8 55 74.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.2e-14 82.8 50 82.0
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.6e-14 82.4 53 73.6
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.6e-14 82.4 53 73.6
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.6e-14 82.4 53 73.6
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-14 82.4 53 73.6
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.6e-14 82.4 59 72.9
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.6e-14 82.4 53 73.6
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.6e-14 82.4 53 73.6
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.6e-14 82.4 56 73.2
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.1e-14 82.0 57 68.4
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.1e-14 82.0 52 73.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.1e-14 82.0 53 75.5
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.7e-14 81.6 58 70.7
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.7e-14 81.6 57 75.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 2.7e-14 81.6 53 75.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.7e-14 81.6 53 73.6
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 3.5e-14 81.3 53 73.6
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.5e-14 81.3 53 71.7
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.6e-14 80.9 50 80.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 4.6e-14 80.9 53 75.5
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 6.0e-14 80.5 53 73.6
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.3e-13 79.3 53 71.7
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.3e-13 79.3 53 71.7
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.3e-13 79.3 53 71.7
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.3e-13 79.3 53 71.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.8e-13 79.0 53 73.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 3.0e-13 78.2 63 65.1
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 6.7e-13 77.0 53 71.7
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.5e-12 75.1 53 67.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.3e-12 74.3 49 75.5
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.8e-11 71.6 53 66.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.7e-11 71.2 45 80.0
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.4e-10 68.6 50 60.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.2e-09 66.2 60 53.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.0e-09 65.5 50 62.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.6e-09 65.1 53 60.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 3.4e-09 64.7 53 58.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 5.8e-09 63.9 40 77.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-09 63.9 43 76.7
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 4.2e-07 57.8 36 83.3
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.1e-07 57.0 37 81.1
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.1e-07 57.0 37 81.1
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.1e-07 57.0 37 81.1
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.1e-07 57.0 37 81.1
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.1e-07 57.0 37 81.1
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.1e-07 57.0 35 85.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.0e-06 53.9 37 73.0
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 6.0e-06 53.9 36 77.8


User provided reference genes

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