Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.7e-103 380.9 589 100.0
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.7e-88 328.9 600 94.8
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.2e-86 322.4 576 80.2
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.1e-81 307.0 283 96.8
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.0e-52 210.3 105 97.1
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 6.4e-50 203.0 151 63.6
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.6e-43 181.0 154 57.1
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 2.9e-42 177.6 130 66.2
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 1.1e-41 175.6 133 62.4
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.9e-41 174.9 283 72.4
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 5.4e-41 173.3 133 63.2
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 7.1e-41 172.9 138 59.4
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 4.6e-40 170.2 128 64.1
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 3.9e-39 167.2 283 70.7
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 9.6e-38 162.5 120 66.7
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 9.0e-36 156.0 144 52.8
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 1.2e-35 155.6 122 60.7
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 4.5e-35 153.7 151 53.6
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.2e-34 151.4 150 44.0
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 2.2e-34 151.4 121 62.0
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 3.8e-34 150.6 121 61.2
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.2e-33 147.5 138 52.2
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.7e-32 144.4 130 52.3
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 1.5e-30 138.7 95 69.5
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 2.5e-30 137.9 85 74.1
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 4.3e-30 137.1 79 82.3
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 1.3e-29 135.6 79 81.0
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 1.6e-29 135.2 150 43.3
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 2.1e-29 134.8 79 79.7
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 2.8e-29 134.4 150 42.0
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 2.8e-29 134.4 97 61.9
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 8.1e-29 132.9 84 72.6
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.1e-28 132.5 84 72.6
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 6.9e-28 129.8 85 75.3
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 1.2e-27 129.0 79 75.9
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 3.4e-27 127.5 84 69.0
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 4.5e-27 127.1 81 77.8
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 4.5e-27 127.1 84 72.6
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 1.0e-26 125.9 137 48.2
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 2.9e-26 124.4 85 71.8
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.9e-26 124.4 130 46.2
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 3.8e-26 124.0 91 67.0
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 3.8e-26 124.0 85 69.4
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 8.4e-26 122.9 79 72.2
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 8.4e-26 122.9 79 72.2
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.4e-25 122.1 79 72.2
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.9e-25 121.7 122 48.4
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.2e-25 120.9 91 73.6
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 3.2e-25 120.9 78 69.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 4.2e-25 120.6 95 64.2
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 5.5e-25 120.2 80 72.5
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 7.1e-25 119.8 109 57.8
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 9.3e-25 119.4 75 74.7
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 9.3e-25 119.4 97 61.9
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 9.3e-25 119.4 78 73.1
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 1.6e-24 118.6 76 76.3
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 1.6e-24 118.6 76 73.7
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 3.5e-24 117.5 71 77.5
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 4.6e-24 117.1 76 69.7
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 4.6e-24 117.1 86 68.6
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 6.0e-24 116.7 76 72.4
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 7.9e-24 116.3 92 62.0
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 7.9e-24 116.3 92 62.0
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 1.0e-23 115.9 114 50.9
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.3e-23 115.5 95 61.1
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 2.3e-23 114.8 72 77.8
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 3.0e-23 114.4 85 64.7
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 3.9e-23 114.0 79 69.6
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 3.9e-23 114.0 86 62.8
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 5.1e-23 113.6 85 63.5
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 6.7e-23 113.2 85 64.7
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 1.1e-22 112.5 79 67.1
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 1.5e-22 112.1 74 66.2
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.5e-22 112.1 86 60.5
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 1.9e-22 111.7 74 67.6
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 1.9e-22 111.7 75 65.3
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 1.9e-22 111.7 75 64.0
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 1.9e-22 111.7 79 63.3
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 2.5e-22 111.3 74 64.9
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 4.3e-22 110.5 79 62.0
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 4.3e-22 110.5 79 62.0
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 7.4e-22 109.8 74 64.9
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 7.4e-22 109.8 82 61.0
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 9.6e-22 109.4 79 63.3
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 1.3e-21 109.0 74 64.9
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 1.3e-21 109.0 74 64.9
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 1.3e-21 109.0 74 64.9
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.6e-21 108.6 85 63.5
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 2.1e-21 108.2 75 70.7
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 2.8e-21 107.8 84 60.7
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 2.8e-21 107.8 84 60.7
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 3.7e-21 107.5 84 64.3
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 6.2e-21 106.7 73 69.9
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 3.1e-20 104.4 65 72.3
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 5.3e-20 103.6 131 41.2
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 9.0e-20 102.8 70 70.0
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 9.0e-20 102.8 72 65.3
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 3.4e-19 100.9 85 56.5
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.3e-18 99.0 72 62.5
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.3e-18 99.0 79 60.8
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 3.2e-17 94.4 152 36.2
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 9.3e-17 92.8 86 48.8
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 1.6e-16 92.0 149 30.9
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.7e-15 86.3 52 80.8
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.5e-14 85.5 62 64.5
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 2.5e-14 84.7 81 53.1
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.4e-12 78.2 130 30.8
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 4.5e-11 73.9 82 50.0
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 1.7e-10 72.0 69 52.2
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.2e-08 65.9 118 29.7
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 2.7e-08 64.7 90 43.3
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 5.1e-07 60.5 80 45.0
Solyc04g072150.3 Solanum lycopersicum HOM05D003028 ORTHO05D003465 2.0e-06 58.5 104 26.9
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.5e-06 58.2 84 34.5
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.3e-06 57.8 104 31.7
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 4.3e-06 57.4 109 25.7
Sopen04g028320 Solanum pennellii HOM05D003028 ORTHO05D003465 7.4e-06 56.6 104 26.0
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 9.7e-06 56.2 104 27.9
CAN.G564.17 Capsicum annuum HOM05D003028 ORTHO05D003465 9.7e-06 56.2 112 26.8
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 9.7e-06 56.2 105 26.7
Pp3c24_8560 Physcomitrium patens HOM05D000001 ORTHO05D000003 9.7e-06 56.2 103 30.1


User provided reference genes

Program Settings