Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01829 Eucalyptus grandis HOM05D003204 ORTHO05D003566 5.8e-45 183.7 85 100.0
Eucgr.C00370 Eucalyptus grandis HOM05D003204 ORTHO05D003566 1.5e-16 89.4 43 93.0
Glyma.13G155200 Glycine max HOM05D003204 ORTHO05D003566 1.3e-15 86.3 43 83.7
TAR625G0968 Trochodendron aralioides HOM05D003204 ORTHO05D003566 4.8e-15 84.3 44 84.1
ClCG06G012220 Citrullus lanatus HOM05D003204 ORTHO05D003566 3.1e-14 81.6 43 81.4
CANSAT11G1901 Cannabis sativa HOM05D003204 ORTHO05D003566 4.1e-14 81.3 44 81.8
Psat4g008960 Pisum sativum HOM05D003204 ORTHO05D003566 4.1e-14 81.3 43 76.7
Potri.018G110800 Populus trichocarpa HOM05D003204 ORTHO05D003566 4.1e-14 81.3 43 79.1
CSS0034071 Camellia sinensis var. sinensis HOM05D003204 ORTHO05D003566 5.3e-14 80.9 43 79.1
Lj4g0022022 Lotus japonicus HOM05D003204 ORTHO05D003566 6.9e-14 80.5 43 76.7
Manes.14G141400 Manihot esculenta HOM05D003204 ORTHO05D003566 9.0e-14 80.1 41 78.0
Sed0002423 Sechium edule HOM05D003204 ORTHO05D003566 9.0e-14 80.1 43 76.7
Cfa020852 Carpinus fangiana HOM05D003204 ORTHO05D003566 2.0e-13 79.0 44 79.5
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 2.6e-13 78.6 43 72.1
SGA_v2.0_scaffold206G41820 Striga asiatica HOM05D003204 ORTHO05D003566 2.6e-13 78.6 44 79.5
arahy.Tifrunner.gnm1.ann1.U4K9V9 Arachis hypogaea HOM05D003204 ORTHO05D003566 3.4e-13 78.2 44 77.3
Glyma.15G205900 Glycine max HOM05D003204 ORTHO05D003566 3.4e-13 78.2 43 74.4
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 3.4e-13 78.2 44 79.5
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 3.4e-13 78.2 44 79.5
VMungo1215G3281 Vigna mungo HOM05D003204 ORTHO05D003566 3.4e-13 78.2 43 74.4
Ca_21108_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 4.5e-13 77.8 43 74.4
Rhsim01G0044000 Rhododendron simsii HOM05D003204 ORTHO05D003566 4.5e-13 77.8 44 79.5
PGSC0003DMG400007893 Solanum tuberosum HOM05D003204 ORTHO05D003566 4.5e-13 77.8 44 79.5
Haze_19240 Corylus avellana HOM05D003204 ORTHO05D003566 5.9e-13 77.4 44 79.5
Actinidia04280 Actinidia chinensis HOM05D003204 ORTHO05D003566 1.0e-12 76.6 44 77.3
CiPaw.16G115300 Carya illinoinensis HOM05D003204 ORTHO05D003566 1.0e-12 76.6 43 74.4
Medtr4g131390 Medicago truncatula HOM05D003204 ORTHO05D003566 1.0e-12 76.6 43 72.1
Psat1g022240 Pisum sativum HOM05D003204 ORTHO05D003566 1.0e-12 76.6 43 72.1
PGSC0003DMG400007892 Solanum tuberosum HOM05D003204 ORTHO05D003566 1.0e-12 76.6 44 79.5
MBI14_g05270_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 1.3e-12 76.3 44 77.3
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 1.3e-12 76.3 44 77.3
Nitab4.5_0002315g0020 Nicotiana tabacum HOM05D003204 ORTHO05D003566 1.3e-12 76.3 44 75.0
PSO384G3133 Papaver somniferum HOM05D003204 ORTHO05D003566 1.3e-12 76.3 43 74.4
Aqoxy3G04310 Aquilegia oxysepala HOM05D003204 ORTHO05D003566 1.7e-12 75.9 44 75.0
TAR626G1088 Trochodendron aralioides HOM05D003204 ORTHO05D003566 1.7e-12 75.9 44 75.0
CANSAT11G0225 Cannabis sativa HOM05D003204 ORTHO05D003566 2.2e-12 75.5 43 72.1
CANSAT11G2588 Cannabis sativa HOM05D003204 ORTHO05D003566 2.2e-12 75.5 44 75.0
CiPaw.15G173600 Carya illinoinensis HOM05D003204 ORTHO05D003566 2.2e-12 75.5 43 74.4
CDE02G3940 Ceratophyllum demersum HOM05D003204 ORTHO05D003566 2.2e-12 75.5 44 77.3
Phvul.009G194100 Phaseolus vulgaris HOM05D003204 ORTHO05D003566 2.2e-12 75.5 44 77.3
SalBow8G4087 Salvia bowleyana HOM05D003204 ORTHO05D003566 2.2e-12 75.5 44 77.3
Actinidia04278 Actinidia chinensis HOM05D003204 ORTHO05D003566 2.9e-12 75.1 44 75.0
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 2.9e-12 75.1 43 74.4
Cpa.g.sc43.125 Carica papaya HOM05D003204 ORTHO05D003566 2.9e-12 75.1 44 75.0
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 2.9e-12 75.1 44 77.3
Rhsim03G0255900 Rhododendron simsii HOM05D003204 ORTHO05D003566 2.9e-12 75.1 44 75.0
EL10Ac8g18842 Beta vulgaris HOM05D003204 ORTHO05D003566 3.8e-12 74.7 44 77.3
MELO3C010244.2 Cucumis melo HOM05D003204 ORTHO05D003566 3.8e-12 74.7 44 72.7
CsaV3_1G028710 Cucumis sativus L. HOM05D003204 ORTHO05D003566 5.0e-12 74.3 44 72.7
Lalb_Chr13g0301021 Lupinus albus HOM05D003204 ORTHO05D003566 5.0e-12 74.3 43 76.7
PSO339G4113 Papaver somniferum HOM05D003204 ORTHO05D003566 6.5e-12 73.9 43 74.4
CSS0013331 Camellia sinensis var. sinensis HOM05D003204 ORTHO05D003566 8.5e-12 73.6 44 77.3
vmacro06095 Vaccinium macrocarpon HOM05D003204 ORTHO05D003566 8.5e-12 73.6 44 75.0
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.1e-11 73.2 44 75.0
Duzib187G0775 Durio zibethinus HOM05D003204 ORTHO05D003566 1.1e-11 73.2 44 75.0
Gorai.009G054500 Gossypium raimondii HOM05D003204 ORTHO05D003566 1.1e-11 73.2 42 73.8
Nitab4.5_0001478g0150 Nicotiana tabacum HOM05D003204 ORTHO05D003566 1.1e-11 73.2 44 72.7
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 1.4e-11 72.8 44 72.7
CDE05G1466 Ceratophyllum demersum HOM05D001160 ORTHO05D001092 1.4e-11 72.8 41 73.2
CDE05G3171 Ceratophyllum demersum HOM05D003204 ORTHO05D003566 1.4e-11 72.8 44 75.0
Lj7A454T32 Lonicera japonica HOM05D003204 ORTHO05D003566 1.4e-11 72.8 44 72.7
MD15G1155500 Malus domestica HOM05D003204 ORTHO05D003566 1.4e-11 72.8 44 75.0
Phvul.003G158100 Phaseolus vulgaris HOM05D003204 ORTHO05D003566 1.4e-11 72.8 43 69.8
Thecc.09G034200 Theobroma cacao HOM05D003204 ORTHO05D003566 1.4e-11 72.8 44 75.0
arahy.Tifrunner.gnm1.ann1.E4NDZP Arachis hypogaea HOM05D003204 ORTHO05D003566 1.9e-11 72.4 44 70.5
Ciclev10009622m.g Citrus clementina HOM05D003204 ORTHO05D003566 1.9e-11 72.4 44 72.7
Gohir.A05G051200 Gossypium hirsutum HOM05D003204 ORTHO05D003566 1.9e-11 72.4 42 73.8
MBI15_g09158_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 1.9e-11 72.4 45 71.1
MBI15_g14741_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 1.9e-11 72.4 45 71.1
Prupe.7G259600 Prunus persica HOM05D003204 ORTHO05D003566 1.9e-11 72.4 44 70.5
PGR142G3740 Punica granatum HOM05D003204 ORTHO05D003566 1.9e-11 72.4 44 70.5
Sed0022031 Sechium edule HOM05D003204 ORTHO05D003566 1.9e-11 72.4 44 72.7
Sc08g0005000 Simmondsia chinensis HOM05D003204 ORTHO05D003566 1.9e-11 72.4 45 71.1
PGSC0003DMG400003187 Solanum tuberosum HOM05D003204 ORTHO05D003566 1.9e-11 72.4 44 72.7
Glyma.09G098900 Glycine max HOM05D003204 ORTHO05D003566 2.5e-11 72.0 43 69.8
Nn8g39800 Nelumbo nucifera HOM05D003204 ORTHO05D003566 2.5e-11 72.0 43 67.4
Sabra18G0093500 Salix brachista HOM05D003204 ORTHO05D003566 2.5e-11 72.0 41 78.0
vmacro13041 Vaccinium macrocarpon HOM05D003204 ORTHO05D003566 2.5e-11 72.0 44 70.5
Actinidia10486 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 68.2
Actinidia23541 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 68.2
Actinidia26338 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 68.2
MSTRG.6109 Avicennia marina HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 72.7
CAN.G520.3 Capsicum annuum HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 72.7
ClCG11G003530 Citrullus lanatus HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 70.5
CsaV3_2G003400 Cucumis sativus L. HOM05D003204 ORTHO05D003566 3.2e-11 71.6 44 70.5
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 4.2e-11 71.2 44 70.5
Solyc07g005210.3 Solanum lycopersicum HOM05D003204 ORTHO05D003566 5.5e-11 70.9 44 72.7
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 5.5e-11 70.9 44 72.7
ATR1153G026 Amborella trichopoda HOM05D003204 ORTHO05D003566 7.2e-11 70.5 45 66.7
Nitab4.5_0003649g0020 Nicotiana tabacum HOM05D003204 ORTHO05D003566 7.2e-11 70.5 44 72.7
Peaxi162Scf00347g00625 Petunia axillaris HOM05D003204 ORTHO05D003566 7.2e-11 70.5 44 72.7
BcaC04g19909 Brassica carinata HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 72.7
A10p16100 Brassica napus HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 72.7
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 72.7
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 72.7
BraA10t43619Z Brassica rapa HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 72.7
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 75.0
Thhalv10014775m.g Eutrema salsugineum HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 70.5
Oeu050478.2 Olea europaea HOM05D003204 ORTHO05D003566 9.4e-11 70.1 44 68.2
Peaxi162Scf00108g00615 Petunia axillaris HOM05D003204 ORTHO05D003566 9.4e-11 70.1 45 73.3
DCAR_017902 Daucus carota HOM05D003204 ORTHO05D003566 1.2e-10 69.7 44 68.2
Dinv41403 Davidia involucrata HOM05D003204 ORTHO05D003566 1.2e-10 69.7 44 70.5
Nitab4.5_0001094g0130 Nicotiana tabacum HOM05D003204 ORTHO05D003566 1.2e-10 69.7 44 68.2
PGR142G1361 Punica granatum HOM05D003204 ORTHO05D003566 1.2e-10 69.7 44 68.2
GSVIVG01003729001 Vitis vinifera HOM05D003204 ORTHO05D003566 1.2e-10 69.7 43 69.8
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 1.6e-10 69.3 44 70.5
Lalb_Chr13g0300991 Lupinus albus HOM05D003204 ORTHO05D003566 1.6e-10 69.3 41 73.2
Peaxi162Scf00347g00618 Petunia axillaris HOM05D003204 ORTHO05D003566 1.6e-10 69.3 44 70.5
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 1.6e-10 69.3 44 72.7
TWI63G1701 Tripterygium wilfordii HOM05D003204 ORTHO05D003566 1.6e-10 69.3 77 50.6
AUR62011274 Chenopodium quinoa HOM05D003204 ORTHO05D003566 2.1e-10 68.9 44 68.2
AUR62039740 Chenopodium quinoa HOM05D003204 ORTHO05D003566 2.1e-10 68.9 44 68.2
Oeu028816.2 Olea europaea HOM05D003204 ORTHO05D003566 2.1e-10 68.9 44 72.7
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 2.7e-10 68.6 44 72.7
AT5G58070 Arabidopsis thaliana HOM05D003204 ORTHO05D003566 3.6e-10 68.2 79 49.4
BcaB05g22400 Brassica carinata HOM05D003204 ORTHO05D003566 3.6e-10 68.2 44 70.5
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 3.6e-10 68.2 44 70.5
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 4.6e-10 67.8 44 68.2
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 4.6e-10 67.8 44 68.2
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 4.6e-10 67.8 44 68.2
Oeu026544.2 Olea europaea HOM05D003204 ORTHO05D003566 4.6e-10 67.8 44 68.2
QL02p092516 Quercus lobata HOM05D003204 ORTHO05D003566 4.6e-10 67.8 43 69.8
Sed0011595 Sechium edule HOM05D003204 ORTHO05D003566 4.6e-10 67.8 44 63.6
THA.LOC104811838 Tarenaya hassleriana HOM05D003204 ORTHO05D003566 4.6e-10 67.8 44 68.2
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 6.1e-10 67.4 44 68.2
Dinv42888 Davidia involucrata HOM05D003204 ORTHO05D003566 7.9e-10 67.0 44 68.2
Dinv43212 Davidia involucrata HOM05D003204 ORTHO05D003566 7.9e-10 67.0 44 68.2
FAN23G2945 Fragaria x ananassa HOM05D003204 ORTHO05D003566 7.9e-10 67.0 43 67.4
FAN26G1065 Fragaria x ananassa HOM05D003204 ORTHO05D003566 7.9e-10 67.0 43 67.4
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 1.0e-09 66.6 44 68.2
FAN28G0838 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.0e-09 66.6 43 67.4
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 1.4e-09 66.2 44 65.9
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 1.4e-09 66.2 44 65.9
FAN19G1614 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.4e-09 66.2 43 69.8
Hma1.2p1_0028F.1_g017340 Hydrangea macrophylla HOM05D003204 ORTHO05D003566 1.4e-09 66.2 42 64.3
TWI34G0588 Tripterygium wilfordii HOM05D003204 ORTHO05D003566 1.8e-09 65.9 87 46.0
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 1.8e-09 65.9 44 65.9
Zm00001eb247000 Zea mays HOM05D003204 ORTHO05D003566 1.8e-09 65.9 44 63.6
AL8G34170 Arabidopsis lyrata HOM05D003204 ORTHO05D003566 2.3e-09 65.5 44 61.4
Cc06_g15300 Coffea canephora HOM05D003204 ORTHO05D003566 2.3e-09 65.5 44 65.9
Aa31LG3G13910 Aethionema arabicum HOM05D003204 ORTHO05D003566 3.0e-09 65.1 44 65.9
ClCG06G012210 Citrullus lanatus HOM05D003204 ORTHO05D003566 3.0e-09 65.1 43 65.1
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 3.0e-09 65.1 43 67.4
Lsat_1_v5_gn_8_61201 Lactuca sativa HOM05D003204 ORTHO05D003566 3.0e-09 65.1 44 68.2
Hund00708 Selenicereus undatus HOM05D003204 ORTHO05D003566 3.0e-09 65.1 44 68.2
ECA236G5021 Erigeron canadensis HOM05D003204 ORTHO05D003566 3.9e-09 64.7 44 68.2
ECA236G4865 Erigeron canadensis HOM05D003204 ORTHO05D003566 5.1e-09 64.3 44 63.6
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 6.7e-09 63.9 44 65.9
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 6.7e-09 63.9 44 65.9
Thecc.09G034400 Theobroma cacao HOM05D003204 ORTHO05D003566 8.8e-09 63.5 45 64.4
Carub.0008s1862 Capsella rubella HOM05D003204 ORTHO05D003566 1.5e-08 62.8 44 61.4
DCAR_019372 Daucus carota HOM05D003204 ORTHO05D003566 2.5e-08 62.0 44 68.2
Hma1.2p1_0222F.1_g093250 Hydrangea macrophylla HOM05D003204 ORTHO05D003566 2.5e-08 62.0 45 64.4
Os02g0612900 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 2.5e-08 62.0 44 61.4
Gohir.D07G029900 Gossypium hirsutum HOM05D003204 ORTHO05D003566 3.3e-08 61.6 43 62.8
Gorai.001G031100 Gossypium raimondii HOM05D003204 ORTHO05D003566 3.3e-08 61.6 43 62.8
Lalb_Chr13g0301031 Lupinus albus HOM05D003204 ORTHO05D003566 3.3e-08 61.6 41 70.7
Lalb_Chr13g0301071 Lupinus albus HOM05D003204 ORTHO05D003566 3.3e-08 61.6 41 70.7
CARHR271880 Cardamine hirsuta HOM05D003204 ORTHO05D003566 4.3e-08 61.2 44 59.1
Lsat_1_v5_gn_8_61241 Lactuca sativa HOM05D003204 ORTHO05D003566 4.3e-08 61.2 44 61.4
Os08g0440100 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 4.3e-08 61.2 43 62.8
HanXRQChr06g0182071 Helianthus annuus HOM05D003204 ORTHO05D003566 5.7e-08 60.8 44 61.4
RcHm_v2.0_Chr2g0086051 Rosa chinensis HOM05D003204 ORTHO05D003566 5.7e-08 60.8 43 58.1
Gohir.A07G026000 Gossypium hirsutum HOM05D003204 ORTHO05D003566 9.7e-08 60.1 43 62.8
HanXRQChr05g0145371 Helianthus annuus HOM05D003204 ORTHO05D003566 1.3e-07 59.7 43 60.5
Eucgr.C04044 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.7e-07 58.2 43 62.8
Eucgr.L00627 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.7e-07 58.2 43 62.8
Zm00001eb041200 Zea mays HOM05D003204 ORTHO05D003566 3.7e-07 58.2 43 58.1
Aqoxy7G03469_Aqoxy7G03470 Aquilegia oxysepala HOM05D003204 ORTHO05D003566 6.3e-07 57.4 77 42.9
Nn2g12303 Nelumbo nucifera HOM05D003204 ORTHO05D003566 6.3e-07 57.4 43 58.1
HanXRQChr06g0180591 Helianthus annuus HOM05D003204 ORTHO05D003566 8.2e-07 57.0 43 55.8
Duzib168G0191 Durio zibethinus HOM05D003204 ORTHO05D003566 2.4e-06 55.5 44 59.1


User provided reference genes

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