Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01814 Eucalyptus grandis HOM05D002343 ORTHO05D004258 2.2e-78 295.4 136 100.0
Eucgr.L02304 Eucalyptus grandis HOM05D002343 ORTHO05D004258 1.9e-42 176.0 129 67.4
Eucgr.E01874 Eucalyptus grandis HOM05D002343 ORTHO05D004258 7.4e-42 174.1 129 66.7
GSVIVG01012072001 Vitis vinifera HOM05D002343 ORTHO05D004258 1.9e-34 149.4 120 57.5
CSS0015569 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D004258 7.4e-34 147.5 114 62.3
TAR626G1712 Trochodendron aralioides HOM05D001622 ORTHO05D002989 1.3e-33 146.7 98 68.4
MSTRG.16345 Avicennia marina HOM05D002343 ORTHO05D004258 1.1e-32 143.7 99 66.7
MSTRG.7594 Avicennia marina HOM05D002343 ORTHO05D004258 1.4e-32 143.3 121 56.2
Rhsim03G0086200 Rhododendron simsii HOM05D002343 ORTHO05D004258 1.4e-32 143.3 99 66.7
Dinv01672 Davidia involucrata HOM05D002343 ORTHO05D004258 2.4e-32 142.5 99 67.7
RhsimUnG0242200 Rhododendron simsii HOM05D000046 ORTHO05D004258 3.1e-32 142.1 99 65.7
GSVIVG01012071001 Vitis vinifera HOM05D002343 ORTHO05D004258 4.0e-32 141.7 115 58.3
vmacro03518 Vaccinium macrocarpon HOM05D002343 ORTHO05D004258 5.3e-32 141.4 99 66.7
Cc09_g06140 Coffea canephora HOM05D002343 ORTHO05D004258 1.2e-31 140.2 99 65.7
CiPaw.10G064800 Carya illinoinensis HOM05D002343 ORTHO05D004258 1.5e-31 139.8 98 65.3
Cc09_g06130 Coffea canephora HOM05D002343 ORTHO05D004258 1.5e-31 139.8 129 55.0
Lj1A1145T22 Lonicera japonica HOM05D002343 ORTHO05D004258 1.5e-31 139.8 118 56.8
Nn7g38152 Nelumbo nucifera HOM05D002343 ORTHO05D004258 1.5e-31 139.8 99 63.6
PGR083G0976 Punica granatum HOM05D002343 ORTHO05D004258 2.6e-31 139.0 98 66.3
CiPaw.09G077700 Carya illinoinensis HOM05D002343 ORTHO05D004258 3.4e-31 138.7 114 57.9
AUR62040764 Chenopodium quinoa HOM05D002343 ORTHO05D004258 4.5e-31 138.3 114 53.5
CiPaw.09G077500 Carya illinoinensis HOM05D002343 ORTHO05D004258 1.0e-30 137.1 114 55.3
Duzib160G0399 Durio zibethinus HOM05D002343 ORTHO05D004258 1.3e-30 136.7 99 64.6
TWI38G1896 Tripterygium wilfordii HOM05D002343 ORTHO05D004258 1.3e-30 136.7 113 57.5
COL.COLO4_30990 Corchorus olitorius HOM05D002343 ORTHO05D004258 2.2e-30 136.0 98 64.3
SGA_v2.0_scaffold175G39364 Striga asiatica HOM05D002343 ORTHO05D004258 2.2e-30 136.0 98 65.3
Cfa000713 Carpinus fangiana HOM05D002343 ORTHO05D004258 2.9e-30 135.6 114 57.9
Aqoxy1G01450 Aquilegia oxysepala HOM05D002343 ORTHO05D004258 3.8e-30 135.2 98 65.3
CiPaw.09G077600 Carya illinoinensis HOM05D002343 ORTHO05D004258 3.8e-30 135.2 108 57.4
Eucgr.D01044 Eucalyptus grandis HOM05D002343 ORTHO05D004258 3.8e-30 135.2 99 62.6
MD05G1252400 Malus domestica HOM05D002343 ORTHO05D004258 3.8e-30 135.2 99 62.6
Actinidia33708 Actinidia chinensis HOM05D002343 ORTHO05D004258 4.9e-30 134.8 99 63.6
SalBow6G5040 Salvia bowleyana HOM05D002343 ORTHO05D004258 4.9e-30 134.8 124 54.0
SalBow8G3202 Salvia bowleyana HOM05D002343 ORTHO05D004258 4.9e-30 134.8 124 54.0
QL11p016333 Quercus lobata HOM05D002343 ORTHO05D004258 6.5e-30 134.4 114 57.0
DCAR_003781 Daucus carota HOM05D002343 ORTHO05D004258 8.4e-30 134.0 99 62.6
Manes.16G057800 Manihot esculenta HOM05D002343 ORTHO05D004258 8.4e-30 134.0 99 62.6
PSO541G1548 Papaver somniferum HOM05D002343 ORTHO05D004258 8.4e-30 134.0 98 63.3
PSO675G5936 Papaver somniferum HOM05D002343 ORTHO05D004258 8.4e-30 134.0 98 63.3
Atru.chr10.496 Acer truncatum HOM05D002343 ORTHO05D004258 1.4e-29 133.3 99 64.6
PSO675G4376 Papaver somniferum HOM05D002343 ORTHO05D004258 1.4e-29 133.3 97 63.9
Gohir.A05G145300 Gossypium hirsutum HOM05D002343 ORTHO05D004258 1.9e-29 132.9 99 63.6
PSO675G1120 Papaver somniferum HOM05D002343 ORTHO05D004258 1.9e-29 132.9 98 61.2
EL10Ac8g18838 Beta vulgaris HOM05D002343 ORTHO05D004258 3.2e-29 132.1 119 52.1
Peaxi162Scf00149g00610 Petunia axillaris HOM05D002343 ORTHO05D004258 3.2e-29 132.1 98 63.3
Thecc.06G142500 Theobroma cacao HOM05D002343 ORTHO05D004258 4.2e-29 131.7 99 63.6
Thecc.06G142700 Theobroma cacao HOM05D002343 ORTHO05D004258 4.2e-29 131.7 99 63.6
unitig_32.g10989 Utricularia gibba HOM05D002343 ORTHO05D004258 4.2e-29 131.7 97 62.9
ECA232G4481 Erigeron canadensis HOM05D002343 ORTHO05D004258 5.5e-29 131.3 98 62.2
Migut.M01979 Erythranthe guttata HOM05D002343 ORTHO05D004258 5.5e-29 131.3 117 55.6
Gorai.009G151800 Gossypium raimondii HOM05D002343 ORTHO05D004258 7.1e-29 131.0 99 61.6
Potri.015G121600 Populus trichocarpa HOM05D002343 ORTHO05D004258 7.1e-29 131.0 127 52.8
Ciclev10015774m.g Citrus clementina HOM05D002343 ORTHO05D004258 9.3e-29 130.6 98 63.3
Gohir.D05G147765 Gossypium hirsutum HOM05D002343 ORTHO05D004258 9.3e-29 130.6 99 61.6
Medtr4g084040 Medicago truncatula HOM05D002343 ORTHO05D004258 9.3e-29 130.6 98 60.2
Nitab4.5_0013428g0010 Nicotiana tabacum HOM05D002343 ORTHO05D004258 9.3e-29 130.6 98 63.3
Thecc.06G142200 Theobroma cacao HOM05D002343 ORTHO05D004258 9.3e-29 130.6 98 63.3
CANSAT35G1115 Cannabis sativa HOM05D002343 ORTHO05D004258 1.2e-28 130.2 125 52.0
Prupe.4G111700 Prunus persica HOM05D002343 ORTHO05D004258 1.2e-28 130.2 99 62.6
QL06p029638 Quercus lobata HOM05D002343 ORTHO05D004258 1.2e-28 130.2 99 62.6
AUR62033030 Chenopodium quinoa HOM05D002343 ORTHO05D004258 1.6e-28 129.8 128 52.3
MD10G1233400 Malus domestica HOM05D002343 ORTHO05D004258 1.6e-28 129.8 99 62.6
Sabra15G0138000 Salix brachista HOM05D002343 ORTHO05D004258 2.7e-28 129.0 127 52.0
AUR62033029 Chenopodium quinoa HOM05D002343 ORTHO05D004258 3.5e-28 128.6 113 52.2
Ca_18764_v3 Cicer arietinum L. HOM05D002343 ORTHO05D004258 3.5e-28 128.6 98 61.2
AUR62040763 Chenopodium quinoa HOM05D002343 ORTHO05D004258 4.6e-28 128.3 128 52.3
Thhalv10000959m.g Eutrema salsugineum HOM05D002343 ORTHO05D004258 4.6e-28 128.3 108 56.5
Sed0022561 Sechium edule HOM05D002343 ORTHO05D004258 4.6e-28 128.3 122 53.3
HPP92_027395 Vanilla planifolia HOM05D002343 ORTHO05D004258 4.6e-28 128.3 127 49.6
vmacro03517 Vaccinium macrocarpon HOM05D002343 ORTHO05D004258 6.0e-28 127.9 97 60.8
AL8G14400 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 7.9e-28 127.5 108 55.6
MD10G1233200 Malus domestica HOM05D002343 ORTHO05D004258 7.9e-28 127.5 99 61.6
CAN.G149.51 Capsicum annuum HOM05D002343 ORTHO05D004258 1.0e-27 127.1 98 61.2
MD05G1251900 Malus domestica HOM05D002343 ORTHO05D004258 1.0e-27 127.1 99 60.6
AT5G45020 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 1.3e-27 126.7 108 55.6
MELO3C021757.2 Cucumis melo HOM05D002343 ORTHO05D004258 1.3e-27 126.7 99 59.6
MBI10_g36385_MAGBIO Magnolia biondii HOM05D002343 ORTHO05D004258 1.3e-27 126.7 114 53.5
Lsat_1_v5_gn_8_117141 Lactuca sativa HOM05D002343 ORTHO05D004258 1.8e-27 126.3 117 53.8
TPR.G20988 Trifolium pratense HOM05D002343 ORTHO05D004258 1.8e-27 126.3 98 60.2
AT4G19880 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 2.3e-27 125.9 114 52.6
A03p52190 Brassica napus HOM05D002343 ORTHO05D004258 2.3e-27 125.9 114 53.5
ClCG01G009460 Citrullus lanatus HOM05D002343 ORTHO05D004258 2.3e-27 125.9 99 59.6
CsaV3_1G046320 Cucumis sativus L. HOM05D002343 ORTHO05D004258 2.3e-27 125.9 99 58.6
RcHm_v2.0_Chr5g0020071 Rosa chinensis HOM05D002343 ORTHO05D004258 3.0e-27 125.6 99 59.6
CARHR177710 Cardamine hirsuta HOM05D002343 ORTHO05D004258 3.9e-27 125.2 98 59.2
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.9e-27 125.2 128 50.8
HanXRQChr15g0487361 Helianthus annuus HOM05D002343 ORTHO05D004258 3.9e-27 125.2 98 60.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 3.9e-27 125.2 98 60.2
THA.LOC104811533 Tarenaya hassleriana HOM05D002343 ORTHO05D004258 3.9e-27 125.2 113 53.1
AL7G34160 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 6.7e-27 124.4 114 52.6
BcaC06g30622 Brassica carinata HOM05D002343 ORTHO05D004258 6.7e-27 124.4 114 53.5
FvH4_3g12250 Fragaria vesca HOM05D002343 ORTHO05D004258 6.7e-27 124.4 99 60.6
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 6.7e-27 124.4 99 60.6
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 6.7e-27 124.4 99 60.6
Psat7g130560 Pisum sativum HOM05D002343 ORTHO05D004258 6.7e-27 124.4 98 59.2
Carub.0007s2133 Capsella rubella HOM05D002343 ORTHO05D004258 1.1e-26 123.6 135 48.1
Carub.0008s0330 Capsella rubella HOM05D002343 ORTHO05D004258 1.5e-26 123.2 99 57.6
Thhalv10027346m.g Eutrema salsugineum HOM05D002343 ORTHO05D004258 1.5e-26 123.2 114 50.9
Nitab4.5_0001288g0060 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.5e-26 123.2 101 59.4
C07p50580 Brassica napus HOM05D002343 ORTHO05D004258 1.9e-26 122.9 114 52.6
CARHR226660 Cardamine hirsuta HOM05D002343 ORTHO05D004258 1.9e-26 122.9 114 50.9
Sp7g18370 Schrenkiella parvula HOM05D002343 ORTHO05D004258 2.5e-26 122.5 98 60.2
SEGI_16350 Sequoiadendron giganteum HOM05D002343 ORTHO05D004258 3.3e-26 122.1 99 56.6
Aa31LG6G2340 Aethionema arabicum HOM05D002343 ORTHO05D004258 7.4e-26 120.9 98 58.2
Lalb_Chr16g0385231 Lupinus albus HOM05D002343 ORTHO05D004258 7.4e-26 120.9 99 58.6
Lj4g0013141 Lotus japonicus HOM05D002343 ORTHO05D004258 9.7e-26 120.6 99 55.6
ATR1152G053 Amborella trichopoda HOM05D002343 ORTHO05D004258 1.3e-25 120.2 98 58.2
BcaNung02545 Brassica carinata HOM05D002343 ORTHO05D004258 1.3e-25 120.2 114 51.8
BolC7t45560H Brassica oleracea HOM05D002343 ORTHO05D004258 2.2e-25 119.4 133 48.1
PGSC0003DMG400010333 Solanum tuberosum HOM05D002343 ORTHO05D004258 2.2e-25 119.4 98 58.2
Phvul.002G098300 Phaseolus vulgaris HOM05D002343 ORTHO05D004258 2.8e-25 119.0 114 51.8
Sp2g09800 Schrenkiella parvula HOM05D002343 ORTHO05D004258 3.7e-25 118.6 108 51.9
Sopen02g018000 Solanum pennellii HOM05D002343 ORTHO05D004258 3.7e-25 118.6 98 57.1
Solyc02g068900.3 Solanum lycopersicum HOM05D002343 ORTHO05D004258 4.8e-25 118.2 98 57.1
Sc17g0004430 Simmondsia chinensis HOM05D002343 ORTHO05D004258 6.3e-25 117.9 98 57.1
CAN.G685.2 Capsicum annuum HOM05D002343 ORTHO05D004258 1.1e-24 117.1 93 60.2
Gohir.D05G147633 Gossypium hirsutum HOM05D002343 ORTHO05D004258 1.1e-24 117.1 85 64.7
Hund22371 Selenicereus undatus HOM05D002343 ORTHO05D004258 1.8e-24 116.3 98 57.1
SEGI_31756 Sequoiadendron giganteum HOM05D002343 ORTHO05D004258 1.8e-24 116.3 99 54.5
arahy.Tifrunner.gnm1.ann1.I4Y26E Arachis hypogaea HOM05D002343 ORTHO05D004258 3.1e-24 115.5 99 57.6
arahy.Tifrunner.gnm1.ann1.Q8EGAM Arachis hypogaea HOM05D002343 ORTHO05D004258 3.1e-24 115.5 99 57.6
BolC2t10626H Brassica oleracea HOM05D002343 ORTHO05D004258 3.1e-24 115.5 108 50.0
Glyma.20G020300 Glycine max HOM05D002343 ORTHO05D004258 3.1e-24 115.5 99 55.6
BcaB07g30484 Brassica carinata HOM05D002343 ORTHO05D004258 4.1e-24 115.2 108 50.0
BcaC03g16717 Brassica carinata HOM05D002343 ORTHO05D004258 4.1e-24 115.2 108 50.0
A02p28780 Brassica napus HOM05D002343 ORTHO05D004258 4.1e-24 115.2 108 50.0
BraA02t07910Z Brassica rapa HOM05D002343 ORTHO05D004258 4.1e-24 115.2 108 50.0
BolC2t10634H Brassica oleracea HOM05D002343 ORTHO05D004258 6.9e-24 114.4 107 50.5
Zm00001eb363840 Zea mays HOM05D002343 ORTHO05D004258 2.0e-23 112.8 98 56.1
C02p45730 Brassica napus HOM05D002343 ORTHO05D004258 2.6e-23 112.5 107 49.5
CARHR177730 Cardamine hirsuta HOM05D002343 ORTHO05D004258 3.4e-23 112.1 99 50.5
Zm00001eb284930 Zea mays HOM05D002343 ORTHO05D004258 3.4e-23 112.1 98 56.1
Glyma.07G222400 Glycine max HOM05D002343 ORTHO05D004258 7.6e-23 110.9 99 54.5
Zm00001eb048240 Zea mays HOM05D002343 ORTHO05D004258 7.6e-23 110.9 98 55.1
A06p46810 Brassica napus HOM05D002343 ORTHO05D004258 1.0e-22 110.5 98 54.1
Zm00001eb270730 Zea mays HOM05D002343 ORTHO05D004258 1.7e-22 109.8 98 54.1
Mapoly0016s0180 Marchantia polymorpha HOM05D002343 ORTHO05D004258 2.2e-22 109.4 100 52.0
BcaC06g31577 Brassica carinata HOM05D002343 ORTHO05D004258 2.9e-22 109.0 98 52.0
BraA06t27553Z Brassica rapa HOM05D002343 ORTHO05D004258 2.9e-22 109.0 98 53.1
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 3.8e-22 108.6 98 54.1
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 1.4e-21 106.7 79 59.5
Zm00001eb132230 Zea mays HOM05D002343 ORTHO05D004258 1.4e-21 106.7 118 48.3
Carub.0008s0331 Capsella rubella HOM05D002343 ORTHO05D004258 2.5e-21 105.9 98 49.0
CDE02G0085 Ceratophyllum demersum HOM05D002343 ORTHO05D004258 2.5e-21 105.9 98 53.1
CBR_g19102 Chara braunii HOM05D002343 ORTHO05D004258 2.5e-21 105.9 121 45.5
SMO358G0526 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 4.2e-21 105.1 98 51.0
SMO358G0163 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 5.5e-21 104.8 98 51.0
SMO358G0446 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 5.5e-21 104.8 98 51.0
Zm00001eb132220 Zea mays HOM05D002343 ORTHO05D004258 5.5e-21 104.8 118 49.2
AL8G14450 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 1.0e-19 100.5 98 50.0
AagrBONN_evm.TU.Sc2ySwM_368.765 Anthoceros agrestis HOM05D002343 ORTHO05D004258 2.3e-19 99.4 98 46.9
Pp3c14_3240 Physcomitrium patens HOM05D002343 ORTHO05D004258 3.9e-19 98.6 99 49.5
A03p52200 Brassica napus HOM05D002343 ORTHO05D004258 1.1e-18 97.1 84 54.8
MD05G1252100 Malus domestica HOM05D002343 ORTHO05D004258 1.1e-18 97.1 76 57.9
BraA03t14291Z Brassica rapa HOM05D002343 ORTHO05D004258 1.9e-18 96.3 84 54.8
Rhsim12G0131300 Rhododendron simsii HOM05D000046 ORTHO05D004258 9.7e-18 94.0 61 70.5
SMO358G0501 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 9.7e-18 94.0 80 53.8
BcaC06g34494 Brassica carinata HOM05D002343 ORTHO05D004258 1.2e-15 87.0 97 48.5
Cpa.g.sc135.12 Carica papaya HOM05D002343 ORTHO05D004258 2.9e-14 82.4 60 63.3
Cre12.g538100 Chlamydomonas reinhardtii HOM05D002343 ORTHO05D004258 2.7e-12 75.9 112 45.5
Zm00001eb202530 Zea mays HOM05D002343 ORTHO05D004258 1.5e-10 70.1 60 55.0
BolC7t43319H Brassica oleracea HOM05D002343 ORTHO05D004258 1.7e-09 66.6 69 49.3
Cre03.g154950 Chlamydomonas reinhardtii HOM05D002343 ORTHO05D004258 2.4e-08 62.8 111 36.9
Cfa027191 Carpinus fangiana HOM05D002343 ORTHO05D004258 5.3e-08 61.6 93 39.8
MCO15G436 Micromonas commoda HOM05D002343 ORTHO05D004258 1.5e-07 60.1 92 38.0


User provided reference genes

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