Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.2e-135 486.9 589 100.0
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.5e-102 377.1 196 95.9
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.4e-81 307.4 283 96.8
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.6e-75 287.3 283 73.5
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 6.8e-68 262.7 330 73.0
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.8e-60 238.0 331 65.6
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 9.2e-57 225.7 166 67.5
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 2.7e-56 224.2 176 61.9
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.9e-55 220.3 328 68.3
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 3.9e-55 220.3 174 61.5
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 3.9e-55 220.3 179 59.2
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 8.6e-55 219.2 179 58.7
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 1.6e-53 214.9 167 62.3
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 6.2e-53 213.0 185 56.2
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 1.4e-52 211.8 328 67.7
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.8e-51 206.5 105 95.2
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 3.8e-50 203.8 166 62.0
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 6.4e-50 203.0 166 61.4
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 7.8e-48 196.1 141 66.0
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.9e-47 193.7 184 52.7
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 6.6e-47 193.0 131 67.9
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 8.7e-47 192.6 125 73.6
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 2.1e-45 188.0 125 72.8
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 6.2e-45 186.4 125 72.8
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.1e-44 184.1 170 52.4
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 4.0e-44 183.7 143 60.1
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 5.3e-44 183.3 125 68.0
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 5.8e-43 179.9 130 65.4
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 7.6e-43 179.5 132 65.9
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 2.2e-42 177.9 132 68.9
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 6.4e-42 176.4 186 52.7
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 8.4e-42 176.0 121 70.2
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 1.9e-41 174.9 117 70.9
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 7.1e-41 172.9 149 56.4
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 9.3e-41 172.6 177 44.1
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.6e-40 171.8 135 63.0
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 2.1e-40 171.4 131 61.8
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 2.1e-40 171.4 124 65.3
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 2.7e-40 171.0 125 66.4
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-40 171.0 125 66.4
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 3.5e-40 170.6 131 65.6
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 6.0e-40 169.9 131 63.4
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 6.0e-40 169.9 187 49.7
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 1.0e-39 169.1 123 65.0
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 1.3e-39 168.7 129 62.8
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 1.3e-39 168.7 129 62.8
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.7e-39 168.3 131 62.6
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.7e-39 168.3 119 67.2
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 1.7e-39 168.3 124 66.1
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 3.9e-39 167.2 127 64.6
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 5.1e-39 166.8 125 65.6
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 8.7e-39 166.0 118 67.8
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.9e-38 164.9 127 64.6
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 2.5e-38 164.5 128 64.8
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 4.3e-38 163.7 314 58.0
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 7.3e-38 162.9 132 63.6
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 2.1e-37 161.4 123 65.0
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 2.1e-37 161.4 117 66.7
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 2.1e-37 161.4 181 43.6
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 3.6e-37 160.6 125 60.8
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 3.6e-37 160.6 130 63.1
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 6.2e-37 159.8 120 61.7
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 8.1e-37 159.5 130 60.0
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 8.1e-37 159.5 125 60.0
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 8.1e-37 159.5 125 60.0
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 1.4e-36 158.7 121 61.2
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 1.8e-36 158.3 121 60.3
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 1.8e-36 158.3 120 61.7
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 1.8e-36 158.3 120 61.7
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 1.8e-36 158.3 120 61.7
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 1.8e-36 158.3 124 66.9
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 1.8e-36 158.3 147 57.1
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 2.4e-36 157.9 132 62.1
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 3.1e-36 157.5 127 65.4
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 4.0e-36 157.1 127 64.6
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 5.3e-36 156.8 120 60.8
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 1.5e-35 155.2 138 58.7
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 1.5e-35 155.2 138 58.7
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 2.6e-35 154.5 116 67.2
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.6e-35 154.5 117 62.4
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 2.6e-35 154.5 144 56.9
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 3.4e-35 154.1 120 60.8
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 1.3e-34 152.1 132 59.1
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 2.2e-34 151.4 128 60.2
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 2.2e-34 151.4 133 57.1
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 2.2e-34 151.4 128 54.7
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 1.4e-33 148.7 123 62.6
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 4.2e-33 147.1 127 56.7
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 5.4e-33 146.7 121 61.2
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 6.0e-32 143.3 111 63.1
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.0e-31 142.5 149 48.3
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 8.7e-31 139.4 122 58.2
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.1e-30 139.0 141 50.4
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 9.6e-30 136.0 128 56.2
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 3.1e-28 131.0 119 51.3
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 1.5e-27 128.6 133 48.9
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 3.4e-27 127.5 108 57.4
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.0e-26 125.9 121 53.7
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 2.1e-24 118.2 152 40.8
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 6.0e-24 116.7 105 55.2
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 1.5e-22 112.1 172 37.2
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 8.2e-21 106.3 65 73.8
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 1.7e-18 98.6 110 49.1
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.9e-18 97.8 169 31.4
Eucgr.E01848 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.2e-17 94.0 65 75.4
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 4.3e-14 84.0 150 31.3
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 2.2e-10 71.6 69 52.2
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.6e-08 65.5 96 32.3
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.5e-06 58.2 140 25.0
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 3.3e-06 57.8 109 25.7
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 3.3e-06 57.8 53 54.7
Pp3c24_8560 Physcomitrium patens HOM05D000001 ORTHO05D000003 3.3e-06 57.8 103 30.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.7e-06 57.0 84 33.3
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 7.4e-06 56.6 104 27.9
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 7.4e-06 56.6 105 26.7


User provided reference genes

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