Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 0.0e+00 1582.0 834 100.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.1e-311 1072.8 830 69.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-303 1045.8 829 68.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.3e-303 1045.4 830 68.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.5e-302 1042.0 838 67.9
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 4.3e-302 1041.2 833 68.7
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 5.6e-302 1040.8 832 67.5
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 4.8e-301 1037.7 836 68.2
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.5e-299 1032.7 830 68.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.5e-299 1031.2 831 67.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 7.6e-299 1030.4 846 67.6
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-298 1030.0 834 65.6
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.3e-298 1029.6 826 66.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.2e-298 1028.9 842 66.3
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.9e-298 1028.5 840 68.2
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.9e-298 1028.5 829 65.7
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 6.5e-298 1027.3 833 65.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.1e-297 1026.5 834 67.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.2e-297 1025.0 836 65.7
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 5.5e-297 1024.2 840 64.8
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 7.1e-297 1023.8 832 66.6
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-296 1023.1 841 65.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.9e-295 1018.1 833 65.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.5e-294 1016.1 840 64.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.3e-294 1014.6 837 66.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.2e-293 1012.3 831 66.7
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 8.2e-293 1010.4 831 66.7
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.1e-292 1010.0 834 64.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.8e-292 1009.2 829 66.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 9.0e-292 1006.9 828 67.9
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.2e-291 1006.5 833 64.3
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.4e-291 1005.0 838 64.9
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.3e-290 1003.0 841 65.0
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 6.5e-290 1000.7 833 64.3
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.5e-289 998.8 834 64.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 7.2e-289 997.3 837 64.4
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.2e-288 996.5 834 64.9
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 4.3e-286 988.0 835 64.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.3e-286 988.0 833 66.4
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 4.8e-285 984.6 834 64.3
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.8e-284 982.6 838 63.5
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 4.1e-284 981.5 844 64.6
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 7.7e-283 977.2 830 63.5
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 8.5e-282 973.8 839 63.4
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.1e-280 967.6 841 63.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-279 966.8 841 63.9
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.0e-279 965.3 835 64.2
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.1e-278 963.4 836 62.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.4e-278 960.7 834 63.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.3e-277 959.9 839 62.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.5e-275 953.0 854 62.4
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 4.7e-272 941.4 824 62.7
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.1e-272 941.0 831 61.3
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 8.0e-272 940.6 834 60.8
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 5.2e-271 937.9 832 61.5
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.5e-270 936.4 845 61.3
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 5.7e-270 934.5 837 61.1
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-269 932.2 841 60.6
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 7.0e-268 927.5 845 60.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.0e-267 926.0 835 61.2
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 5.9e-267 924.5 832 60.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.5e-266 920.6 845 60.2
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 8.0e-264 914.1 834 60.2
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.7e-262 907.9 842 60.1
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.3e-260 901.4 841 58.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 2.0e-259 899.4 838 60.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 5.0e-258 894.8 866 58.8
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.7e-256 889.0 829 59.5
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.0e-250 870.5 832 57.6
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.4e-247 860.1 822 59.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.8e-247 859.8 878 56.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.0e-247 858.6 927 53.1
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 8.9e-247 857.4 839 58.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 8.9e-247 857.4 843 57.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 5.7e-246 854.7 843 58.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.7e-245 853.2 824 59.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.8e-245 852.4 824 58.9
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.8e-245 852.4 824 58.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.1e-244 850.5 831 57.8
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.1e-244 850.5 841 57.8
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.4e-244 849.4 781 60.3
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 9.2e-244 847.4 819 58.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 4.7e-240 835.1 824 58.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 4.7e-240 835.1 824 58.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 5.2e-239 831.6 840 56.1
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-237 826.2 847 57.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-234 817.0 831 56.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.1e-231 807.4 860 53.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 4.0e-231 805.4 837 55.7
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 5.8e-230 801.6 842 55.2
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.4e-228 797.0 825 53.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.4e-228 797.0 854 52.9
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.6e-224 783.5 837 56.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 6.4e-221 771.5 688 62.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 4.0e-215 752.3 679 61.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.8e-208 729.6 835 50.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.7e-205 720.3 851 49.4
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.6e-203 713.8 807 51.9
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.3e-202 710.7 833 49.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.6e-200 703.7 613 61.5
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.9e-194 682.6 558 64.3
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-183 647.5 442 79.6
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.7e-178 628.6 608 58.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 5.7e-169 599.0 602 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.9e-156 557.4 877 39.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 2.0e-150 537.3 451 63.2
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 3.7e-136 490.0 886 37.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 3.5e-134 483.4 840 39.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 4.5e-134 483.0 379 68.1
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.0e-133 481.9 790 40.0
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.6e-133 478.8 492 55.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.1e-131 474.2 393 66.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-123 448.0 335 71.9
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-110 405.2 311 67.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.2e-107 395.2 452 53.3
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 6.2e-107 392.9 930 31.6
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.0e-97 361.3 292 64.0
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.1e-92 345.5 452 46.9
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 7.1e-87 326.2 324 57.4
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 7.9e-86 322.8 300 65.0
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 4.8e-83 313.5 237 69.2
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-82 312.4 237 68.4
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.1e-74 284.3 231 64.1
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 9.3e-71 272.7 200 68.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.7e-70 271.2 270 61.5
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 7.9e-62 243.0 822 26.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 7.4e-60 236.5 195 62.6
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.9e-56 224.6 214 54.2
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 7.2e-55 219.9 147 72.8
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.2e-47 194.5 182 57.1
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-40 171.8 154 60.4
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.2e-39 167.5 149 58.4
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.1e-38 165.2 205 48.3
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.6e-38 164.5 155 56.8
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 4.8e-35 154.1 170 53.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.2e-33 149.4 574 25.8
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-31 142.9 176 47.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.6e-30 139.0 111 63.1
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.6e-30 139.0 602 26.4
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 8.8e-29 133.3 516 23.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.0e-28 132.1 276 39.1
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 7.5e-28 130.2 106 62.3
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 3.1e-26 124.8 278 37.4
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 3.5e-25 121.3 285 36.5
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 8.0e-22 110.2 73 63.0
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 8.8e-21 106.7 118 54.2
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-18 99.8 200 44.5
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 3.1e-18 98.2 203 43.8
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.0e-18 97.1 76 67.1
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 8.6e-16 90.1 179 42.5
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.9e-15 89.0 52 73.1
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 3.6e-14 84.7 100 51.0
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.4e-13 82.8 83 54.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 8.9e-13 80.1 55 69.1
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-12 79.0 69 58.0
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.5e-12 77.0 89 56.2
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.7e-08 65.9 55 54.5
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.3e-08 65.5 62 54.8
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 2.3e-08 65.5 58 53.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.3e-08 65.5 58 53.4
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.3e-07 61.6 147 28.6
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.6e-07 60.8 46 60.9
arahy.Tifrunner.gnm1.ann1.TP987Q Arachis hypogaea HOM05D004092 ORTHO05D016651 1.2e-06 59.7 45 66.7
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.2e-06 59.7 46 60.9
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.6e-06 59.3 46 60.9
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 6.2e-06 57.4 91 46.2


User provided reference genes

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