Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 2.8e-288 994.6 497 100.0
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 7.4e-217 757.3 497 75.5
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 5.3e-215 751.1 497 71.2
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 1.8e-210 736.1 497 71.4
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 1.7e-208 729.6 490 71.2
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 1.1e-207 726.9 495 71.7
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 2.4e-207 725.7 495 72.3
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.0e-206 722.6 487 70.2
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 3.5e-206 721.8 492 70.5
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 4.5e-206 721.5 493 69.8
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 1.0e-205 720.3 495 71.7
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 5.0e-205 718.0 490 71.4
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.5e-204 716.5 495 70.5
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 2.5e-204 715.7 495 69.5
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 9.4e-204 713.8 495 68.3
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.1e-203 712.6 495 68.9
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.4e-202 709.9 466 73.2
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.4e-202 709.9 495 69.1
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 3.4e-201 705.3 484 70.0
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 3.4e-201 705.3 483 70.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 3.4e-201 705.3 494 69.2
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 5.7e-201 704.5 495 68.7
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.7e-200 703.0 490 69.6
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 8.3e-200 700.7 490 70.4
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.4e-199 699.1 490 69.2
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.4e-199 698.0 510 68.0
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.5e-198 694.9 510 67.3
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.5e-198 694.9 510 67.3
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.5e-198 694.9 510 67.3
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 5.9e-198 694.5 495 67.9
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 7.7e-198 694.1 491 69.5
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 1.3e-197 693.3 467 70.7
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.3e-197 693.3 466 71.2
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 2.2e-197 692.6 495 68.7
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 3.8e-197 691.8 496 67.1
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 5.0e-197 691.4 490 68.8
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 8.5e-197 690.6 475 70.7
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.1e-196 690.3 488 67.6
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 7.2e-196 687.6 546 64.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 1.6e-195 686.4 493 66.5
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 2.7e-195 685.6 496 67.9
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 6.1e-195 684.5 546 64.3
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 8.0e-195 684.1 466 72.5
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.2e-193 680.2 493 65.7
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 2.6e-193 679.1 495 66.5
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 7.5e-193 677.6 492 66.9
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 1.3e-192 676.8 487 66.3
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 3.7e-192 675.2 494 66.8
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 1.1e-191 673.7 492 65.4
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.1e-191 673.7 495 66.7
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.8e-191 672.9 484 67.8
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 1.2e-190 670.2 489 65.8
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 3.5e-190 668.7 493 66.7
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 4.5e-190 668.3 483 65.6
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 5.9e-190 667.9 483 65.6
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 7.7e-190 667.5 495 65.5
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 1.0e-189 667.2 497 67.2
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 3.8e-189 665.2 483 65.4
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 3.8e-189 665.2 483 65.4
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 4.3e-188 661.8 471 66.9
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 4.3e-188 661.8 487 66.3
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 3.0e-186 655.6 476 66.6
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 4.4e-185 651.7 525 61.1
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 5.7e-185 651.4 482 65.4
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.8e-183 646.4 491 64.8
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 1.2e-182 643.7 438 72.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 5.9e-182 641.3 502 65.5
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 2.3e-181 639.4 494 63.0
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 6.6e-181 637.9 453 66.7
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.3e-180 635.6 524 62.2
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 4.3e-180 635.2 477 66.9
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 5.6e-180 634.8 493 61.3
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 6.2e-179 631.3 460 66.7
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 8.3e-176 620.9 600 55.7
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 1.6e-174 616.7 523 58.7
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 1.5e-172 610.1 495 61.4
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 4.3e-172 608.6 527 57.3
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 4.0e-170 602.1 487 57.9
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 2.9e-168 595.9 465 65.2
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 1.9e-167 593.2 509 58.9
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 5.1e-165 585.1 410 68.5
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 1.2e-163 580.5 493 58.4
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 8.4e-160 567.8 416 67.1
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.3e-156 555.8 426 64.8
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 4.7e-155 552.0 513 56.5
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.4e-154 550.4 517 52.6
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 8.4e-152 541.2 394 65.5
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 2.3e-149 533.1 484 56.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 5.3e-146 521.9 495 54.1
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 1.2e-145 520.8 485 54.2
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 1.7e-144 516.9 396 62.6
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 7.9e-142 508.1 334 75.1
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 1.5e-140 503.8 486 52.3
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 6.9e-138 495.0 334 75.1
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 9.0e-138 494.6 488 54.9
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 4.9e-136 488.8 335 72.5
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 1.8e-133 480.3 689 41.9
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 2.4e-130 469.9 428 56.3
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 9.0e-130 468.0 530 50.4
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 8.5e-120 434.9 465 51.6
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.6e-118 430.6 988 32.3
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 9.7e-116 421.4 302 69.2
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 2.0e-105 387.1 347 57.6
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 2.4e-98 363.6 427 50.6
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 1.7e-96 357.5 498 43.2
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 2.9e-80 303.5 251 62.5
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.5e-80 302.4 201 75.1
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 5.2e-77 292.7 557 36.1
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 7.8e-73 278.9 309 52.8
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 1.5e-68 264.6 486 36.6
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.9e-65 252.7 201 65.7
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 2.4e-58 230.7 180 61.1
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 5.2e-53 213.0 159 62.9
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.1e-42 178.7 161 58.4
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 6.2e-38 162.9 117 70.1
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 7.1e-34 149.4 113 55.8
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 1.4e-29 135.2 148 48.0
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 3.3e-23 114.0 61 78.7
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 8.1e-22 109.4 80 71.2
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.6e-17 95.1 64 73.4
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.1e-14 84.7 101 44.6
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 6.9e-13 79.7 41 82.9
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 9.0e-13 79.3 79 41.8
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 2.2e-11 74.7 48 68.8
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 2.2e-11 74.7 46 71.7
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 4.2e-10 70.5 57 59.6
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.9e-07 61.6 264 23.1
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.2e-06 58.2 225 24.0
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 3.7e-06 57.4 314 24.8
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 4.8e-06 57.0 119 27.7
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 6.3e-06 56.6 211 25.6
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.3e-06 56.6 220 26.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.3e-06 56.6 220 26.4


User provided reference genes

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