Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 0.0e+00 1739.2 888 100.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 4.8e-283 978.0 878 59.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 6.9e-282 974.2 894 58.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.4e-281 971.8 891 58.1
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 8.5e-280 967.2 893 57.3
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.3e-269 932.6 877 55.9
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 3.0e-269 932.2 885 56.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-265 920.2 877 55.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.6e-265 919.1 877 56.1
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.9e-265 917.9 880 55.3
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 3.8e-264 915.2 891 56.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-263 913.7 878 55.1
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.0e-261 907.1 885 54.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.8e-261 904.0 881 55.3
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.6e-260 902.5 873 54.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.4e-260 901.7 887 55.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.4e-260 901.0 887 55.5
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 7.4e-260 901.0 860 56.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.7e-259 898.7 896 54.7
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 4.8e-259 898.3 877 54.6
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 6.3e-259 897.9 871 54.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 8.2e-259 897.5 877 54.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.5e-257 892.1 877 54.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 5.9e-257 891.3 887 54.8
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-256 890.6 914 53.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.5e-256 887.9 878 54.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 8.5e-256 887.5 882 54.6
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.9e-255 886.3 878 56.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.5e-255 884.8 878 53.8
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 4.0e-253 878.6 894 52.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.1e-250 870.5 876 54.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-249 867.1 891 53.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.7e-249 865.9 748 59.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 6.5e-248 861.3 742 59.8
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.4e-245 853.6 868 52.8
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.5e-244 850.1 926 51.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 4.8e-243 845.1 881 53.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.3e-243 844.7 878 51.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-242 844.0 895 52.4
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.4e-242 842.8 878 51.9
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 4.1e-242 842.0 831 53.3
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.6e-241 840.1 890 51.6
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 4.5e-241 838.6 950 49.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.0e-240 837.4 889 53.1
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.9e-239 833.2 889 52.6
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.6e-236 822.8 880 49.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 4.4e-236 822.0 942 51.2
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.3e-235 820.5 849 54.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 3.7e-235 818.9 880 53.8
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.5e-233 812.4 891 49.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.1e-231 807.4 880 49.1
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.5e-231 806.2 864 51.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.6e-230 803.5 880 50.2
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.4e-229 800.4 881 50.4
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 3.4e-228 795.8 897 50.1
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 3.4e-228 795.8 888 52.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.7e-227 793.5 883 51.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 7.8e-225 784.6 878 48.7
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.0e-224 784.3 880 48.8
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.0e-221 774.2 866 50.6
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.0e-221 772.3 882 47.5
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.0e-216 756.1 874 49.3
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 3.9e-216 755.7 880 47.3
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 8.6e-216 754.6 901 47.8
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.6e-214 750.4 958 46.1
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.7e-214 748.8 892 46.6
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.6e-212 743.0 882 48.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 4.4e-212 742.3 876 47.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.1e-209 733.4 862 49.8
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 4.6e-209 732.3 893 47.7
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.0e-208 731.1 878 46.4
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.3e-208 730.7 695 54.1
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 5.6e-207 725.3 887 48.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.2e-206 724.2 894 46.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 8.9e-205 718.0 648 58.2
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.5e-204 717.2 894 47.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 2.2e-203 713.4 886 46.8
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.4e-202 709.9 736 53.0
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 5.4e-202 708.8 695 53.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.6e-201 707.2 885 46.3
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 6.0e-201 705.3 885 46.3
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.7e-200 703.7 887 45.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 8.6e-200 701.4 885 46.1
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.1e-199 701.0 912 45.1
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 5.6e-199 698.7 887 45.7
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.6e-198 696.0 893 44.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 4.7e-198 695.7 804 47.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-197 693.7 934 43.3
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.4e-197 693.3 895 44.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.0e-197 691.4 886 45.7
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 9.9e-196 688.0 882 47.1
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.2e-195 686.8 858 47.3
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.7e-193 679.9 888 45.7
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.3e-192 676.8 906 43.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 5.6e-191 672.2 902 43.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 9.0e-189 664.8 833 46.2
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.5e-188 662.5 708 50.8
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.7e-187 660.6 727 50.2
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.1e-181 639.8 882 43.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.5e-175 620.2 700 49.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.8e-174 616.7 633 52.8
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.4e-172 609.8 663 49.0
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.9e-160 569.7 688 43.6
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.8e-157 560.8 879 39.7
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.7e-155 554.3 695 46.8
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-152 544.7 761 43.4
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 6.5e-139 499.2 880 36.5
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.1e-138 498.4 643 44.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.1e-138 498.4 779 38.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-136 491.5 910 38.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-131 475.3 559 47.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.6e-115 419.1 549 42.4
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 4.3e-114 416.8 688 37.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 4.6e-108 396.7 755 36.8
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.8e-104 382.9 261 73.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.3e-96 357.8 239 75.3
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.7e-94 351.7 597 36.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.6e-92 343.6 950 29.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.5e-90 337.8 953 29.6
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.5e-90 337.8 953 29.6
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.3e-90 337.4 240 71.2
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-90 337.0 245 69.4
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.1e-89 334.7 813 32.7
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 7.1e-85 319.7 399 46.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.0e-83 315.8 731 30.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.2e-78 298.1 192 78.6
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 9.6e-74 282.7 193 73.6
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.7e-70 271.9 192 72.4
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.4e-69 266.9 204 62.7
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-68 265.4 518 34.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.1e-64 251.1 752 29.5
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.9e-58 231.9 266 50.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.8e-56 225.3 339 41.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.1e-56 224.6 353 38.5
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.9e-54 218.0 176 59.1
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 4.6e-52 210.7 143 75.5
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.3e-51 209.1 220 47.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 2.2e-49 201.8 324 38.3
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.7e-46 192.2 213 46.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.2e-41 175.3 143 63.6
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.4e-40 172.6 108 77.8
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 3.4e-39 167.9 222 44.1
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-39 166.8 162 53.1
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.7e-39 166.8 228 43.9
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 5.5e-37 160.6 225 42.2
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-35 156.0 176 45.5
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.6e-34 151.8 236 41.5
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 8.2e-33 146.7 222 38.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.2e-29 134.8 84 81.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.6e-28 131.3 104 70.2
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 4.1e-24 117.9 443 25.5
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.1e-24 117.9 245 32.2
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.3e-22 112.8 96 59.4
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.5e-21 109.4 100 56.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.9e-21 109.0 95 57.9
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.2e-21 108.2 188 36.2
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.6e-20 105.9 196 35.2
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.7e-20 105.1 110 50.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 7.2e-13 80.5 124 35.5
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.3e-11 75.5 177 33.3
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.4e-10 71.6 88 42.0
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 4.1e-08 64.7 49 67.3
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 7.0e-08 63.9 100 44.0


User provided reference genes

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