Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 2303.9 1174 100.0
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1796.6 1183 76.9
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1753.8 1181 76.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1734.2 1184 74.8
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1732.6 1184 75.1
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1728.4 1183 74.5
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1724.9 1186 75.2
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1190 74.0
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1716.4 1190 74.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1715.7 1184 74.0
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1714.5 1183 74.0
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1714.1 1190 73.7
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1700.3 1186 73.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1698.3 1182 73.8
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1696.8 1188 73.9
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1696.0 1183 73.3
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1691.8 1183 73.9
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1687.5 1183 73.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1685.2 1183 73.8
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1682.5 1186 73.0
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1678.3 1212 71.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1674.8 1187 72.3
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1672.1 1187 72.3
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1672.1 1185 71.8
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1671.4 1182 72.8
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1669.4 1187 71.9
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1226 71.0
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1183 71.3
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1664.4 1185 71.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1664.0 1184 72.4
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1661.7 1182 72.6
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1661.7 1196 71.3
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1661.0 1186 72.3
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1651.3 1189 72.0
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1650.6 1180 70.7
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1647.1 1184 72.3
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1644.4 1189 71.6
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1644.4 1184 71.3
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1178 71.6
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1628.2 1186 70.5
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1185 70.0
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1626.3 1228 68.6
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1622.8 1258 68.4
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1622.4 1189 70.9
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1620.1 1185 70.4
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1613.6 1181 69.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1611.3 1183 69.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1608.6 1190 69.5
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1607.0 1189 69.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1604.0 1179 69.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1180 69.1
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1590.5 1183 69.2
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1185 68.2
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1191 69.6
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1583.9 1183 68.8
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1182 68.4
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1242 67.1
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1580.1 1183 68.4
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1579.7 1190 68.7
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1578.5 1180 68.8
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1184 68.0
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1572.4 1180 68.1
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1572.0 1184 67.7
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1570.8 1232 66.2
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1181 68.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1568.1 1195 67.9
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1557.7 1183 67.1
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1557.3 1181 67.6
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1167 69.2
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1553.9 1182 67.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1553.5 1183 67.5
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1550.4 1183 67.3
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1542.7 1184 67.7
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1536.9 1180 67.1
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1179 67.1
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1533.5 1237 65.2
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1525.0 1180 66.8
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1522.3 1181 66.4
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1521.9 1092 70.8
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1518.4 1183 66.3
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1518.1 1183 66.3
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1518.1 1181 67.4
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1504.2 1185 66.3
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1495.7 1168 65.7
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1493.0 1009 74.8
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1482.2 1183 65.3
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1480.7 1023 73.1
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1477.6 1199 64.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1467.2 1198 64.9
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1466.1 1181 64.8
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1395.6 1185 61.7
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1360.9 1182 61.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1353.6 1209 60.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1342.8 1177 59.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1311.2 1186 58.6
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1303.9 1038 65.7
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1217.6 888 69.9
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1167.1 965 62.2
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1123.6 1195 51.2
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1116.3 888 65.9
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1111.7 1180 53.8
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1099.7 1172 50.2
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.6e-305 1052.4 794 67.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 6.3e-299 1031.2 1198 48.6
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 9.4e-295 1017.3 816 64.6
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 2.1e-286 989.6 868 62.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.2e-267 926.4 584 81.2
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 6.6e-256 888.3 1152 45.9
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.3e-219 767.7 1245 38.2
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.6e-193 681.0 603 58.5
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.7e-190 671.0 621 56.8
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 9.1e-189 665.2 465 72.9
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.8e-181 641.0 1313 35.4
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 4.2e-170 603.2 1218 33.3
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.3e-155 555.1 645 50.1
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 8.6e-147 525.8 392 67.6
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.5e-146 525.0 393 68.7
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.6e-129 468.4 322 71.7
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.5e-122 444.5 1090 31.9
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.1e-121 441.4 698 43.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 3.2e-109 401.0 262 77.5
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.8e-91 342.0 342 52.9
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.8e-88 332.0 266 63.5
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.8e-88 332.0 266 63.5
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.9e-75 287.7 195 73.3
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.5e-70 270.0 161 85.7
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.5e-63 248.1 210 61.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 7.2e-61 240.4 161 76.4
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.2e-58 233.0 175 68.6
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.7e-55 220.3 161 68.9
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.8e-51 207.2 165 64.2
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.3e-43 182.2 160 60.0
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.7e-41 174.9 104 76.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.4e-32 145.6 1234 22.4
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.8e-31 140.6 118 64.4
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 2.3e-30 139.0 226 42.0
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 7.3e-21 107.5 115 47.8
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 4.7e-20 104.8 115 46.1
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 4.7e-20 104.8 93 53.8
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.8e-19 102.8 131 40.5
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.0e-18 99.4 62 79.0
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 4.4e-18 98.2 165 38.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 7.6e-18 97.4 157 40.1
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 4.6e-15 88.2 122 42.6
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 3.3e-13 82.0 90 50.0
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.1e-12 79.3 115 40.0
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.1e-12 79.3 119 42.9
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 6.2e-12 77.8 263 28.1
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.4e-10 71.6 169 33.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.9e-08 66.2 156 33.3
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 4.6e-07 61.6 59 50.8
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 7.8e-07 60.8 92 39.1
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 1.3e-06 60.1 45 60.0
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 3.9e-06 58.5 57 50.9
Gohir.A06G137902 Gossypium hirsutum HOM05D002560 ORTHO05D016211 3.9e-06 58.5 43 58.1
Gohir.A13G120100 Gossypium hirsutum HOM05D000181 ORTHO05D016211 5.1e-06 58.2 46 58.7


User provided reference genes

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